Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | R4Z09_RS07135 | Genome accession | NZ_CP137640 |
| Coordinates | 1428598..1429668 (+) | Length | 356 a.a. |
| NCBI ID | WP_338451645.1 | Uniprot ID | - |
| Organism | Niallia oryzisoli strain DSM 29761 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1423598..1434668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R4Z09_RS07105 (R4Z09_07105) | - | 1424244..1424558 (+) | 315 | WP_338451639.1 | MTH1187 family thiamine-binding protein | - |
| R4Z09_RS07110 (R4Z09_07110) | - | 1424622..1424795 (-) | 174 | WP_338451640.1 | DUF2759 domain-containing protein | - |
| R4Z09_RS07115 (R4Z09_07115) | - | 1425049..1425663 (+) | 615 | WP_338451641.1 | MBL fold metallo-hydrolase | - |
| R4Z09_RS07120 (R4Z09_07120) | - | 1425816..1426877 (+) | 1062 | WP_338451642.1 | SAM-dependent methyltransferase | - |
| R4Z09_RS07125 (R4Z09_07125) | - | 1427214..1427459 (-) | 246 | WP_338451643.1 | DUF2626 domain-containing protein | - |
| R4Z09_RS07130 (R4Z09_07130) | - | 1427664..1428365 (-) | 702 | WP_338451644.1 | helix-turn-helix domain-containing protein | - |
| R4Z09_RS07135 (R4Z09_07135) | comGA | 1428598..1429668 (+) | 1071 | WP_338451645.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| R4Z09_RS07140 (R4Z09_07140) | comGB | 1429655..1430686 (+) | 1032 | WP_338451646.1 | competence type IV pilus assembly protein ComGB | - |
| R4Z09_RS07145 (R4Z09_07145) | comGC | 1430714..1431013 (+) | 300 | WP_338453219.1 | competence type IV pilus major pilin ComGC | - |
| R4Z09_RS07150 (R4Z09_07150) | comGD | 1431018..1431473 (+) | 456 | WP_338451647.1 | competence type IV pilus minor pilin ComGD | - |
| R4Z09_RS07155 (R4Z09_07155) | - | 1431484..1431783 (+) | 300 | WP_338451648.1 | hypothetical protein | - |
| R4Z09_RS07160 (R4Z09_07160) | comGF | 1431767..1432213 (+) | 447 | WP_338451649.1 | competence type IV pilus minor pilin ComGF | - |
| R4Z09_RS07165 (R4Z09_07165) | comGG | 1432203..1432589 (+) | 387 | WP_338451650.1 | competence type IV pilus minor pilin ComGG | - |
| R4Z09_RS07170 (R4Z09_07170) | - | 1432748..1432960 (+) | 213 | WP_338451651.1 | YqzE family protein | - |
| R4Z09_RS07175 (R4Z09_07175) | - | 1432992..1433777 (-) | 786 | WP_338451652.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40055.27 Da Isoelectric Point: 7.9495
>NTDB_id=899654 R4Z09_RS07135 WP_338451645.1 1428598..1429668(+) (comGA) [Niallia oryzisoli strain DSM 29761]
MSLIERLADRIITEAVRSHATDVHIIPRRNDTLVQLRISNRLIPKIQLPKEECDRLISHFKFTASMDIGERRRPQSGACS
FMIDGQMIGLRLSTLPASQNESLVIRILPQQETVPSFQISLFPSMTRKLLALLKHSHGLIILTGPTGSGKTSTLYALLNE
TSHLYNRNIITLEDPIEKENDLVLQVQVNEKAGVTYTTGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLTTMH
TRDSKGAIYRLIEFGVNWQEIEQTLVAITAQRLVELTCPFCSSHCTPSCFGYERPKRASVFELLSGRDLRAALGEARGED
SKFCYKTLREEIRKGIALGYIKESEFARWVFTDEAE
MSLIERLADRIITEAVRSHATDVHIIPRRNDTLVQLRISNRLIPKIQLPKEECDRLISHFKFTASMDIGERRRPQSGACS
FMIDGQMIGLRLSTLPASQNESLVIRILPQQETVPSFQISLFPSMTRKLLALLKHSHGLIILTGPTGSGKTSTLYALLNE
TSHLYNRNIITLEDPIEKENDLVLQVQVNEKAGVTYTTGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLTTMH
TRDSKGAIYRLIEFGVNWQEIEQTLVAITAQRLVELTCPFCSSHCTPSCFGYERPKRASVFELLSGRDLRAALGEARGED
SKFCYKTLREEIRKGIALGYIKESEFARWVFTDEAE
Nucleotide
Download Length: 1071 bp
>NTDB_id=899654 R4Z09_RS07135 WP_338451645.1 1428598..1429668(+) (comGA) [Niallia oryzisoli strain DSM 29761]
TTGAGTTTAATTGAAAGGCTGGCTGACCGAATTATTACGGAAGCTGTTAGAAGCCACGCAACCGATGTCCACATTATCCC
CCGAAGAAATGATACTCTCGTACAGCTAAGAATCTCAAACAGATTAATTCCCAAAATTCAACTTCCCAAAGAAGAATGTG
ACCGATTAATATCCCACTTTAAATTTACTGCATCAATGGATATTGGCGAAAGAAGAAGACCCCAAAGCGGTGCTTGTTCA
TTTATGATAGATGGACAAATGATTGGTCTTAGGTTATCAACCCTCCCGGCTAGTCAAAATGAAAGTCTGGTGATTCGAAT
TCTTCCTCAGCAAGAAACTGTACCTTCCTTTCAAATCTCACTGTTTCCTTCCATGACAAGAAAATTATTAGCTTTATTAA
AACACTCCCACGGACTGATTATCCTAACCGGGCCGACCGGAAGCGGTAAAACCTCCACCTTATATGCCTTATTAAATGAA
ACCTCACATCTCTATAATCGAAATATCATCACATTAGAAGACCCGATTGAAAAGGAAAATGACTTAGTACTTCAGGTTCA
GGTTAACGAAAAAGCTGGTGTTACATATACAACCGGTTTAAAGGCAATCCTGAGACATGATCCCGATATTATAATGGTTG
GTGAGATTCGAGATGCTGAAACTGCTAAGATTGCTGTAAGGGCAGCTCTTACAGGACATTTAGTTTTGACAACGATGCAT
ACGAGGGATTCGAAGGGAGCTATATACAGGCTTATTGAGTTTGGTGTTAACTGGCAGGAGATTGAGCAGACGCTAGTCGC
AATAACAGCTCAGCGATTAGTGGAATTGACATGCCCATTTTGTTCCAGTCACTGCACACCATCCTGTTTTGGGTATGAAC
GTCCGAAAAGAGCAAGTGTATTTGAACTTTTGTCTGGAAGAGACTTAAGAGCGGCCTTGGGGGAGGCACGCGGAGAGGAC
AGTAAGTTCTGTTACAAAACATTACGGGAAGAAATTCGTAAAGGAATTGCTTTAGGATATATTAAGGAAAGTGAATTTGC
TAGGTGGGTATTTACAGATGAAGCGGAGTAA
TTGAGTTTAATTGAAAGGCTGGCTGACCGAATTATTACGGAAGCTGTTAGAAGCCACGCAACCGATGTCCACATTATCCC
CCGAAGAAATGATACTCTCGTACAGCTAAGAATCTCAAACAGATTAATTCCCAAAATTCAACTTCCCAAAGAAGAATGTG
ACCGATTAATATCCCACTTTAAATTTACTGCATCAATGGATATTGGCGAAAGAAGAAGACCCCAAAGCGGTGCTTGTTCA
TTTATGATAGATGGACAAATGATTGGTCTTAGGTTATCAACCCTCCCGGCTAGTCAAAATGAAAGTCTGGTGATTCGAAT
TCTTCCTCAGCAAGAAACTGTACCTTCCTTTCAAATCTCACTGTTTCCTTCCATGACAAGAAAATTATTAGCTTTATTAA
AACACTCCCACGGACTGATTATCCTAACCGGGCCGACCGGAAGCGGTAAAACCTCCACCTTATATGCCTTATTAAATGAA
ACCTCACATCTCTATAATCGAAATATCATCACATTAGAAGACCCGATTGAAAAGGAAAATGACTTAGTACTTCAGGTTCA
GGTTAACGAAAAAGCTGGTGTTACATATACAACCGGTTTAAAGGCAATCCTGAGACATGATCCCGATATTATAATGGTTG
GTGAGATTCGAGATGCTGAAACTGCTAAGATTGCTGTAAGGGCAGCTCTTACAGGACATTTAGTTTTGACAACGATGCAT
ACGAGGGATTCGAAGGGAGCTATATACAGGCTTATTGAGTTTGGTGTTAACTGGCAGGAGATTGAGCAGACGCTAGTCGC
AATAACAGCTCAGCGATTAGTGGAATTGACATGCCCATTTTGTTCCAGTCACTGCACACCATCCTGTTTTGGGTATGAAC
GTCCGAAAAGAGCAAGTGTATTTGAACTTTTGTCTGGAAGAGACTTAAGAGCGGCCTTGGGGGAGGCACGCGGAGAGGAC
AGTAAGTTCTGTTACAAAACATTACGGGAAGAAATTCGTAAAGGAATTGCTTTAGGATATATTAAGGAAAGTGAATTTGC
TAGGTGGGTATTTACAGATGAAGCGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.18 |
100 |
0.562 |
| pilB | Glaesserella parasuis strain SC1401 |
38.218 |
97.753 |
0.374 |