Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   R4Z09_RS06390 Genome accession   NZ_CP137640
Coordinates   1285731..1288088 (+) Length   785 a.a.
NCBI ID   WP_338451505.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280731..1293088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS06375 (R4Z09_06375) spoVB 1280984..1282567 (-) 1584 WP_338451502.1 stage V sporulation protein B -
  R4Z09_RS06380 (R4Z09_06380) - 1282680..1282976 (+) 297 WP_338451503.1 post-transcriptional regulator -
  R4Z09_RS06385 (R4Z09_06385) secDF 1283197..1285464 (+) 2268 WP_338451504.1 protein translocase subunit SecDF -
  R4Z09_RS06390 (R4Z09_06390) recJ 1285731..1288088 (+) 2358 WP_338451505.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  R4Z09_RS06395 (R4Z09_06395) - 1288092..1288604 (+) 513 WP_338451506.1 adenine phosphoribosyltransferase -
  R4Z09_RS06400 (R4Z09_06400) - 1288797..1290992 (+) 2196 WP_338451507.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  R4Z09_RS06405 (R4Z09_06405) dtd 1291003..1291440 (+) 438 WP_338451508.1 D-aminoacyl-tRNA deacylase -
  R4Z09_RS06410 (R4Z09_06410) - 1291471..1292829 (-) 1359 WP_338451509.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88295.85 Da        Isoelectric Point: 4.9103

>NTDB_id=899651 R4Z09_RS06390 WP_338451505.1 1285731..1288088(+) (recJ) [Niallia oryzisoli strain DSM 29761]
MLQSKTRWIVRSSKKEKVTQLVEEINVTPLVASLLVNRGLENPEEARAFLFSEKQEFHDPFLFLDMDKAVNRIKQAIEAN
EAIMIFGDYDADGVTSTTIMMKTLQKLGANVQFYIPNRFTEGYGPNEGAFRYAHEIGIGLIITVDTGIAALNEARVAKEL
GMDLIITDHHEPGPELPDAFAIIHPKREGSTYPFQELCGAGVAFKMAHALLGEVPQQLLQFAAIGTIADLVPLKDENRLI
TQRGLNIIRNTDSVGLKALFKLASVEPDSTNEETIGFSIAPRINAAGRLDSADPAVYLMLTDDPYEAETLAEDIEQLNKD
RKELVNSITEEAVQMVEQQYPIEENSFLIVGKEGWNAGVIGIVASRLVEKYYRPTICLSYDQEKGLAKGSARSIAGFDLF
KNLSTCRDILPHFGGHTSAAGMTLNISDVDELRRRMNQLANEQLTEEDLIPITYIDTEVSVHDIQLNSIEEMNKLAPYGM
ENPKPKVLIKEANIGSIRKIGSEQNHLKLTLEHEGISLDGVGFGLGEVCDHISPASKLSVIGELSINEWNNRKKPQIFLQ
DLSVSSWQLFDYRGAKKILGIADTLPPEKTKWIVFRQEYALRLQKSIDDADVFCISSNSEAEEIQLDQCHVVLVDLPPSK
EILNRLLSGKKVARIYAHLFKAESDFFSTIPTREHFKWFYALIAKKGPFDLKRNSDAIAKHKGWTIETIDFMSKVFFELD
FVTMENGLISLNKGLVKRDLADSRSYQQKLAQYELEKDLLYSSFQQLKDWFDQLIHETVKFEEAL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=899651 R4Z09_RS06390 WP_338451505.1 1285731..1288088(+) (recJ) [Niallia oryzisoli strain DSM 29761]
ATGTTACAGTCAAAAACACGTTGGATTGTTCGATCTTCAAAAAAAGAAAAAGTCACCCAGCTGGTGGAAGAAATCAATGT
GACGCCACTGGTTGCATCGCTACTTGTGAACAGAGGACTTGAAAATCCTGAGGAAGCAAGGGCTTTTTTATTTAGTGAAA
AACAGGAATTCCATGATCCATTTCTCTTTTTGGATATGGACAAAGCCGTAAATAGAATTAAACAAGCGATAGAGGCAAAC
GAAGCGATCATGATTTTTGGCGATTATGACGCAGATGGTGTTACAAGTACAACAATTATGATGAAAACGCTACAGAAGCT
TGGGGCAAATGTGCAATTTTACATACCAAATCGTTTCACGGAAGGGTATGGGCCTAATGAAGGTGCGTTCAGGTATGCAC
ATGAAATCGGAATCGGTCTTATTATTACTGTTGATACAGGTATTGCCGCTCTTAATGAAGCAAGGGTAGCCAAAGAGCTT
GGAATGGATTTAATTATTACAGATCACCATGAACCAGGACCGGAGCTGCCTGATGCCTTTGCGATTATTCATCCGAAAAG
AGAAGGAAGTACGTATCCTTTTCAAGAGCTTTGCGGGGCCGGCGTTGCCTTTAAAATGGCCCATGCCTTATTAGGGGAGG
TTCCTCAACAATTATTGCAGTTTGCTGCAATTGGCACGATTGCCGATCTTGTTCCCTTAAAGGATGAAAATAGACTTATT
ACCCAAAGGGGATTGAATATAATAAGAAATACGGATAGTGTTGGGTTAAAAGCTCTTTTTAAGCTTGCTAGTGTTGAACC
GGATTCAACAAATGAGGAAACAATCGGCTTCAGCATTGCCCCGCGGATCAATGCTGCAGGGAGACTTGACAGTGCAGATC
CAGCGGTTTATTTAATGCTTACAGATGATCCTTATGAGGCAGAAACTTTAGCGGAGGATATCGAGCAATTAAATAAAGAT
AGAAAAGAATTGGTTAACAGCATTACAGAAGAAGCTGTCCAGATGGTTGAACAACAATATCCAATTGAGGAGAACAGCTT
TCTTATTGTCGGGAAGGAAGGCTGGAATGCGGGGGTCATCGGAATTGTCGCCTCAAGGCTTGTTGAAAAATACTACCGTC
CGACTATTTGTTTAAGCTATGATCAGGAAAAGGGACTTGCGAAAGGCTCAGCTCGAAGTATTGCTGGGTTTGATCTATTT
AAAAATTTGTCCACCTGCCGTGATATTTTACCACATTTTGGAGGGCACACTAGTGCTGCAGGTATGACGTTAAATATCAG
TGATGTAGATGAGCTGCGGCGACGTATGAATCAGCTTGCCAATGAGCAGTTAACAGAAGAGGATTTAATCCCTATTACGT
ATATTGATACAGAGGTTTCTGTTCATGATATCCAGCTAAATTCCATTGAAGAAATGAATAAATTAGCACCATACGGAATG
GAAAATCCCAAGCCTAAAGTGCTTATTAAAGAAGCAAATATTGGCAGTATTCGAAAGATCGGTTCGGAGCAAAATCATTT
AAAATTGACTTTAGAGCATGAAGGAATTTCTTTAGACGGAGTGGGCTTCGGTCTCGGCGAAGTTTGTGATCATATTTCAC
CAGCTTCCAAGCTGTCTGTCATAGGGGAATTATCGATTAATGAATGGAATAATCGCAAAAAGCCGCAAATCTTTTTACAG
GATCTTTCCGTCTCCTCATGGCAGCTCTTTGATTACCGTGGTGCCAAAAAGATACTAGGAATAGCAGACACCTTGCCGCC
TGAAAAGACAAAATGGATTGTTTTCCGTCAGGAATATGCTTTAAGACTACAAAAATCAATTGACGATGCTGATGTTTTTT
GTATTTCTTCAAACTCTGAAGCAGAAGAGATTCAGCTTGACCAGTGCCATGTTGTATTAGTTGACTTACCGCCTTCAAAG
GAAATCCTTAACCGGCTGCTGTCAGGAAAAAAAGTGGCAAGAATTTATGCCCATTTATTCAAAGCAGAAAGTGACTTTTT
CTCAACGATTCCAACTAGAGAGCATTTTAAATGGTTTTATGCGTTAATTGCTAAAAAAGGGCCATTTGATTTGAAACGAA
ATAGTGATGCCATTGCAAAGCATAAGGGATGGACAATAGAAACAATTGATTTTATGTCAAAGGTGTTTTTTGAACTCGAT
TTTGTTACAATGGAAAATGGACTGATTTCATTGAACAAGGGTTTAGTTAAGCGGGATTTAGCAGATTCCAGATCGTATCA
GCAAAAACTGGCTCAATATGAGCTGGAAAAGGATTTGTTATATTCGTCGTTTCAACAGTTAAAAGACTGGTTTGATCAAT
TAATTCATGAAACGGTGAAATTTGAGGAGGCTTTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.955

98.981

0.544