Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   R4Z10_RS16400 Genome accession   NZ_CP137636
Coordinates   3215661..3218030 (-) Length   789 a.a.
NCBI ID   WP_338470365.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3210661..3223030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS16380 (R4Z10_16375) - 3210689..3211855 (+) 1167 WP_338470361.1 N-acetylmuramoyl-L-alanine amidase -
  R4Z10_RS16385 (R4Z10_16380) dtd 3211921..3212361 (-) 441 WP_338470362.1 D-aminoacyl-tRNA deacylase -
  R4Z10_RS16390 (R4Z10_16385) - 3212375..3214567 (-) 2193 WP_338470363.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  R4Z10_RS16395 (R4Z10_16390) - 3215158..3215670 (-) 513 WP_338470364.1 adenine phosphoribosyltransferase -
  R4Z10_RS16400 (R4Z10_16395) recJ 3215661..3218030 (-) 2370 WP_338470365.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  R4Z10_RS16405 (R4Z10_16400) secDF 3218541..3220805 (-) 2265 WP_338470366.1 protein translocase subunit SecDF -
  R4Z10_RS16410 (R4Z10_16405) - 3221090..3221386 (-) 297 WP_338470367.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88381.22 Da        Isoelectric Point: 5.0778

>NTDB_id=899625 R4Z10_RS16400 WP_338470365.1 3215661..3218030(-) (recJ) [Niallia sp. XMNu-256]
MLQSRTRWIVRPSNNEKIMGLADQIGISPLVASLLVNRGLENPAQARAFLFNEEQEFHDPFLLKDMDKAVQRVQEAITAG
EPILIFGDYDADGVTSTTVMMKTLQELGANVDFYIPNRFTEGYGPNEGAFRYAHENGVKLIITVDTGIAALQPAQVAKEL
GMDLIITDHHEPGPELPEALAILHPKLENSAYPFTELAGVGVALKFSHALLGRVTDDLLQFAAIGTVADLVPLKAENRLI
VQKGIIQLRKSQNPGIKALLKAAKVDQAQINEETIGFTLGPRINAVGRLDDASPAVYLLLEEDALQAEILAEDIEQLNID
RKEIVNQITEEAIRLVEEHYPLTENKCIVVGKENWNAGVIGIVASKLVERYYRPTIVLSYDVEKGLAKGSARSIDGFDLF
KNLSTCRDILPHFGGHTMAAGMTLNIADVDQFRNRLNTLANEQLLEEELTPVSYIDSEVSIEDISIDVVEEMNRLAPYGT
ENPKPKVLIKDAPIANIRKIGSEKNHLKLTLDHGGMSLDGVGFGLGDVFDQVSPMSKLSVIGELSINEWNNQRKPQIFLQ
DLAVLSWQLFDYRGGKKITPLAATLPIESTKWIVFDSNLHARLARSLQNSDVIWVSSEAEALQIDLDHCHVILVDFPPSK
NLLIQLLSGKKVARIYAHFYKAQSDFFSTIPTRDHFKWFYAFLAKKGPFELQKYSSMLAKQRGWTKETVDFMAKVFLDLN
FVTMENGLITLNRNANKHDLSDSITYKQKQEALMLEKELIYSSYEQLKSWFDALLHTTVHHEEEVKEWI

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=899625 R4Z10_RS16400 WP_338470365.1 3215661..3218030(-) (recJ) [Niallia sp. XMNu-256]
ATGTTACAGTCAAGAACACGTTGGATTGTTCGACCGTCAAATAATGAAAAGATAATGGGATTAGCAGATCAAATAGGAAT
ATCGCCATTAGTTGCTTCGCTACTTGTTAATAGAGGATTAGAAAATCCTGCTCAGGCAAGGGCTTTTTTATTTAATGAAG
AACAAGAATTCCATGATCCCTTTTTACTGAAAGACATGGATAAAGCTGTTCAAAGGGTTCAGGAAGCAATTACAGCTGGA
GAACCGATTCTGATTTTCGGAGATTATGATGCCGATGGGGTTACAAGCACAACGGTTATGATGAAAACATTACAGGAACT
TGGGGCAAATGTTGATTTTTACATACCGAATCGTTTTACTGAGGGCTATGGTCCGAACGAAGGGGCGTTCAGGTATGCGC
ATGAAAATGGAGTCAAACTGATTATTACCGTTGATACCGGGATCGCCGCTCTACAGCCAGCACAAGTGGCAAAAGAGCTT
GGGATGGATTTAATCATAACAGATCACCACGAACCGGGACCAGAACTGCCAGAGGCTTTAGCGATTCTGCACCCTAAATT
AGAGAATAGCGCATATCCATTCACAGAGCTGGCGGGAGTCGGGGTCGCTTTGAAATTCTCTCATGCGTTGCTTGGCAGAG
TAACAGACGATTTACTACAGTTTGCTGCCATTGGAACGGTAGCTGATCTAGTTCCGCTTAAAGCTGAAAATCGATTAATT
GTTCAAAAGGGAATAATACAACTAAGGAAAAGTCAAAACCCTGGCATAAAGGCATTACTAAAAGCAGCAAAAGTAGATCA
AGCACAGATTAACGAAGAAACGATTGGCTTTACACTAGGGCCTCGAATTAACGCAGTCGGAAGGCTTGATGATGCATCCC
CTGCTGTTTATCTATTATTAGAAGAAGATGCTCTCCAAGCGGAAATATTGGCAGAAGACATTGAGCAGCTAAATATTGAC
CGGAAAGAGATCGTGAACCAAATTACAGAAGAAGCGATCAGATTAGTGGAAGAGCATTATCCACTTACCGAAAATAAATG
TATCGTTGTAGGGAAGGAAAACTGGAACGCTGGAGTCATCGGAATTGTTGCATCAAAGCTTGTTGAAAGATATTATCGTC
CAACGATTGTTTTAAGCTATGATGTAGAAAAGGGACTTGCGAAAGGATCAGCAAGAAGTATTGATGGTTTTGATTTATTT
AAAAATCTATCAACCTGTCGAGATATTTTACCCCATTTCGGCGGACATACAATGGCTGCGGGAATGACATTAAATATTGC
CGATGTTGATCAGTTTAGAAACCGATTGAACACACTTGCTAACGAACAACTTTTAGAAGAAGAATTAACTCCGGTTAGTT
ATATTGATTCAGAAGTAAGCATTGAAGATATTAGCATTGACGTAGTTGAGGAAATGAATCGTTTAGCCCCTTATGGGACA
GAAAATCCAAAGCCAAAGGTTCTTATTAAAGATGCACCAATAGCTAATATAAGAAAAATAGGCTCAGAGAAAAATCATTT
AAAATTAACATTGGATCACGGGGGGATGAGCTTAGACGGAGTTGGATTTGGATTAGGAGATGTCTTTGATCAGGTTTCCC
CGATGTCCAAGTTATCTGTGATCGGTGAATTGTCGATTAACGAGTGGAATAATCAACGAAAACCACAAATATTTTTGCAA
GATTTAGCAGTATTATCATGGCAGTTATTTGATTATCGCGGTGGGAAAAAAATTACCCCTTTAGCTGCTACATTACCAAT
TGAAAGCACAAAATGGATTGTTTTTGATTCGAATTTGCATGCAAGACTTGCAAGATCATTACAGAATTCAGATGTAATAT
GGGTATCTTCTGAAGCGGAGGCATTACAAATAGATCTAGACCATTGTCATGTCATTTTAGTTGACTTTCCTCCTTCAAAA
AATCTATTAATTCAATTGTTGTCTGGAAAAAAAGTTGCGAGGATTTACGCCCATTTTTATAAGGCACAAAGTGATTTCTT
CTCAACCATTCCAACAAGAGACCATTTTAAATGGTTTTATGCCTTTTTAGCAAAAAAAGGTCCATTTGAATTGCAAAAAT
ATAGTAGTATGCTAGCTAAACAACGTGGATGGACGAAGGAAACAGTCGACTTTATGGCAAAGGTGTTTTTAGACCTAAAT
TTTGTTACAATGGAAAATGGACTGATTACCTTAAATAGAAATGCAAATAAGCATGATTTATCGGATTCAATCACATATAA
GCAGAAACAGGAAGCCTTAATGTTAGAGAAAGAATTAATATATTCATCTTATGAGCAATTAAAAAGTTGGTTTGATGCAC
TGCTTCACACAACGGTTCATCATGAGGAGGAAGTTAAGGAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52

98.226

0.511