Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   R4Z10_RS16325 Genome accession   NZ_CP137636
Coordinates   3197908..3200322 (+) Length   804 a.a.
NCBI ID   WP_338470351.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3192908..3205322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS16305 (R4Z10_16300) - 3195036..3196118 (-) 1083 WP_338470347.1 AI-2E family transporter -
  R4Z10_RS16310 (R4Z10_16305) - 3196233..3196424 (-) 192 WP_338470348.1 hypothetical protein -
  R4Z10_RS16315 (R4Z10_16310) - 3196441..3196917 (-) 477 WP_338470349.1 PRC-barrel domain-containing protein -
  R4Z10_RS16320 (R4Z10_16315) - 3197218..3197865 (+) 648 WP_338470350.1 tetratricopeptide repeat protein -
  R4Z10_RS16325 (R4Z10_16320) recD2 3197908..3200322 (+) 2415 WP_338470351.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R4Z10_RS16330 (R4Z10_16325) mnmA 3200477..3201592 (-) 1116 WP_338470352.1 tRNA 2-thiouridine(34) synthase MnmA -
  R4Z10_RS16335 (R4Z10_16330) - 3201609..3202754 (-) 1146 WP_338470353.1 cysteine desulfurase family protein -
  R4Z10_RS16340 (R4Z10_16335) - 3202800..3203219 (-) 420 WP_338470354.1 Rrf2 family transcriptional regulator -
  R4Z10_RS16345 (R4Z10_16340) - 3203221..3203901 (-) 681 WP_338470355.1 YitT family protein -
  R4Z10_RS16350 (R4Z10_16345) - 3204018..3205301 (-) 1284 WP_338470356.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90749.69 Da        Isoelectric Point: 4.7758

>NTDB_id=899624 R4Z10_RS16325 WP_338470351.1 3197908..3200322(+) (recD2) [Niallia sp. XMNu-256]
MEKQDSLDLFGEQTKFIKGRPIVTIFHNEQNLYTVLKIRVDETNEDYEDKEAVITGYFPRIHEHEHYIFYGEMKDHPKFG
LQFHATHFRKDIPQTKQGVVTYLSSELFKGIGKKTAEKIVETLGENAITRILNQPSLLDTVPKLPPEKAKDLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIFQAYKETTLDVIQSNPYKLVEDVEGIGFARADELGFQLGISGSHPDRIKAGCLFILEQ
ECMQNGHVYVQAETLLVKVQTLLEENKRDQIEFDDITLELLKLNEEGKIIVEDQRFYLPYLYYSEKGLVTSIEKLLQQTQ
YEEAFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPLLILTGGPGTGKTTVIKGIVELYAELHGCSLNPNDYKKEE
PFPFLLTAPTGRAAKRMSESTGLPAVTIHRLLGWNGSEGFDHHEDNPLEGKILIVDESSMVDIWLANKLFKALPENIQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTIRLTDIYRQAEGSSIIELAHCIKDGDLPANVSAPTKDRSFIKCQSGHIADVV
QKVILNAVKKGYSPRDIQVLAPMYKGPAGIDRLNKVLQEALNGNPDGKRKEIVFGDTTYRVGDKVLQLVNQPDQHVYNGD
MGEIVSVFYAKENVEKQDMVVVSFEGTEVTYTRQDLGQITLAYCCSVHKAQGSEFPIVILPIVKSYYRMLRRNLIYTAIT
RSKQFLILCGEEDALMNGVKRADEQMRQTTLMEKLSGLSEGDNQVEDTILEVETDNTSEISYEEMLMNVDPMIGMEGITP
YHFM

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=899624 R4Z10_RS16325 WP_338470351.1 3197908..3200322(+) (recD2) [Niallia sp. XMNu-256]
TTGGAAAAACAGGATTCATTAGACTTGTTTGGCGAACAAACGAAATTTATAAAAGGAAGACCCATTGTTACGATTTTTCA
TAATGAGCAGAACTTATATACGGTATTAAAGATACGAGTAGATGAAACAAACGAAGATTACGAAGACAAAGAAGCTGTAA
TAACTGGATATTTTCCGAGGATTCATGAGCACGAACATTATATTTTTTATGGAGAAATGAAAGACCATCCCAAGTTTGGC
CTTCAATTTCACGCAACCCATTTTCGCAAAGATATTCCTCAAACAAAACAAGGGGTGGTTACCTATCTTTCAAGCGAGCT
GTTCAAAGGTATCGGGAAGAAAACTGCCGAAAAAATTGTAGAAACCCTTGGAGAAAATGCAATTACGAGGATTCTGAATC
AACCTTCTTTACTAGACACCGTGCCAAAGCTTCCACCAGAAAAAGCCAAAGATTTATATGACACGTTGATGGAGCACCAA
GGACTTGAACAAGCAATGATTGCCCTAAATCAATATGGCTTCGGTCCCCAATTATCCATGAGAATTTTTCAAGCCTACAA
AGAAACGACTCTCGACGTAATCCAATCAAATCCTTATAAACTTGTTGAAGATGTTGAAGGGATTGGATTTGCGCGTGCCG
ATGAGCTAGGGTTTCAATTAGGAATTTCCGGAAGTCATCCCGATCGAATCAAAGCCGGATGTCTCTTTATTTTAGAACAA
GAGTGTATGCAAAATGGCCATGTTTATGTACAGGCTGAAACCTTATTGGTCAAGGTGCAAACTTTATTAGAGGAAAATAA
ACGAGATCAAATTGAATTTGATGATATTACACTGGAACTACTGAAACTAAATGAAGAGGGAAAAATCATTGTTGAGGATC
AACGTTTTTACTTACCTTATCTTTATTATTCTGAGAAAGGTCTTGTCACAAGTATTGAGAAGCTATTACAGCAAACTCAA
TATGAGGAAGCTTTTCCTGAATCCGAGTTTTTATTAGCATTAGGGAATCTTGAGGAACGTTTAGGGGTTCAATATGCACC
GACCCAAAAAGAGGCAATCCAAACCGCCTTAATGTCGCCATTGTTAATTTTAACAGGGGGGCCTGGGACGGGAAAAACGA
CAGTCATTAAAGGGATTGTGGAGCTTTATGCTGAGCTACACGGTTGTTCGTTAAACCCGAATGATTACAAAAAAGAAGAG
CCCTTTCCATTTTTACTAACAGCACCTACTGGGAGAGCAGCGAAGCGAATGTCCGAATCCACAGGACTGCCTGCTGTCAC
CATTCACCGCTTATTAGGCTGGAATGGGTCAGAAGGTTTTGATCATCATGAAGACAATCCACTAGAGGGTAAAATCTTAA
TCGTTGATGAAAGTTCAATGGTCGATATTTGGTTGGCAAATAAACTTTTTAAAGCGTTGCCGGAAAATATCCAAGTCATT
TTGGTTGGTGACGAAGATCAGCTTCCTTCTGTAGGCCCTGGTCAAGTATTAAAAGATTTATTACGTTCAGAACGAATTCC
AACCATTCGCTTAACGGATATTTATCGTCAAGCAGAAGGTTCATCGATTATTGAGCTGGCGCACTGCATTAAAGATGGCG
ATTTACCTGCCAATGTTTCCGCTCCAACGAAAGACCGTTCTTTTATTAAGTGTCAGTCTGGTCATATTGCAGATGTTGTC
CAAAAGGTTATTTTAAATGCGGTAAAGAAAGGTTACTCGCCTCGGGATATTCAAGTATTAGCCCCGATGTACAAAGGACC
AGCAGGAATTGATCGTCTCAACAAAGTGCTACAGGAAGCGTTAAATGGCAACCCGGATGGGAAGCGAAAGGAAATTGTTT
TTGGTGATACTACTTATCGTGTAGGTGATAAAGTACTTCAATTGGTCAACCAACCCGATCAGCATGTTTATAATGGAGAT
ATGGGTGAAATTGTGTCTGTGTTTTATGCAAAGGAAAATGTTGAAAAACAAGATATGGTTGTTGTTTCCTTTGAAGGTAC
AGAAGTCACCTATACAAGGCAAGATTTGGGACAAATCACATTGGCTTATTGTTGTTCCGTGCATAAAGCACAAGGGAGCG
AATTTCCAATTGTGATTTTGCCAATTGTAAAAAGCTATTACCGAATGCTGCGCAGAAACCTAATTTATACTGCGATTACA
AGAAGTAAACAATTTTTAATTCTTTGTGGGGAAGAAGACGCTTTAATGAATGGGGTTAAGCGGGCTGACGAACAAATGCG
TCAAACCACCTTAATGGAGAAATTATCTGGTTTAAGCGAAGGCGACAATCAGGTTGAAGATACGATTTTGGAAGTGGAAA
CTGACAACACCTCTGAGATTTCCTATGAAGAAATGCTAATGAATGTCGATCCTATGATTGGTATGGAAGGAATTACACCC
TATCATTTTATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.644

99.876

0.616