Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   R6U77_RS13185 Genome accession   NZ_CP137624
Coordinates   2642895..2645195 (+) Length   766 a.a.
NCBI ID   WP_319835977.1    Uniprot ID   -
Organism   Lysinibacillus louembei strain Ll15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2637895..2650195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U77_RS13165 (R6U77_13165) - 2638209..2638511 (+) 303 WP_319835973.1 post-transcriptional regulator -
  R6U77_RS13170 (R6U77_13170) secDF 2638883..2641147 (+) 2265 WP_319835974.1 protein translocase subunit SecDF -
  R6U77_RS13175 (R6U77_13175) - 2641231..2642286 (+) 1056 WP_319835975.1 SMI1/KNR4 family protein -
  R6U77_RS13180 (R6U77_13180) - 2642399..2642803 (+) 405 WP_319835976.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  R6U77_RS13185 (R6U77_13185) recJ 2642895..2645195 (+) 2301 WP_319835977.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  R6U77_RS13190 (R6U77_13190) - 2645199..2645711 (+) 513 WP_319835978.1 adenine phosphoribosyltransferase -
  R6U77_RS13195 (R6U77_13195) lepB 2645941..2646600 (+) 660 WP_319835979.1 signal peptidase I -
  R6U77_RS13200 (R6U77_13200) - 2646774..2648963 (+) 2190 WP_293920724.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  R6U77_RS13205 (R6U77_13205) dtd 2648977..2649417 (+) 441 WP_319835980.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 85846.42 Da        Isoelectric Point: 5.2830

>NTDB_id=899452 R6U77_RS13185 WP_319835977.1 2642895..2645195(+) (recJ) [Lysinibacillus louembei strain Ll15]
MASINKKWVIQRPNEQHVEHLQKQLKLSPIAAKILVARGCQTVEQAQKILSMDEQAIHDPFLLHNMDKAVARIEQALEAG
EKILIYGDYDADGITSTTVMLHTLLDLGADVDFVIPNRFAHGYGPNEQLFREAHEKGVQLIITVDNGISGIEPIRVAKEL
GMDVIVTDHHEAGEVLPPADVIIHPRVPEGHYPFGELAGVGVALKVAHALYGEIPTHLYELAAIGTIADLVPLVDENRYI
VKQGIKHLRQSQSPWVEAFCKVASAKQAEINEETIGFYFGPRLNAIGRLGDAMPGVHFMKSEDMETAKELAELLNSKNAE
RKNIVATITEEAVAMIESDDKLKNAHVLVVAQEGWNPGVVGIVASMLVEQYYRPTIVLSLDTEKGTAKGSARSIEGFHLF
NELAKNRDILPHFGGHPMAAGMTLAAAHVEQLQMRLNEQAKACLTEEQLIPKLTIDIPLELSEITVEAIEEIGQLGPFGT
DFPKPVFALEQVKVSAMRKIGANENHLKLELDDGYCTMDAVGFNKGYLFNEISYGVALSFVGDLQINEWQNRKKPQFMVQ
DVQSNEWQLFDLRGKKQLVNIPQEETLFVVFDKQLVPYFEQHVPVTLAEQIVGQKPYVAVLDLPPNEERLAELLQRLQPQ
RIYAHFYTASSQYFSGMPTRQHFSWYYGFLKKRPNFALQQHIEPLAKHIGLNIDVINFMTKVFFELGFVTIENGLTTVVE
SAPKQALETAPSYKERSAQIQLEQKLLYATYSELKQWLDGQMSRED

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=899452 R6U77_RS13185 WP_319835977.1 2642895..2645195(+) (recJ) [Lysinibacillus louembei strain Ll15]
ATGGCGAGTATAAACAAAAAATGGGTAATCCAACGCCCAAATGAACAGCATGTAGAGCATTTGCAAAAGCAATTAAAGCT
ATCGCCAATCGCGGCAAAAATTTTAGTAGCACGTGGCTGCCAAACGGTTGAGCAAGCACAAAAAATATTATCAATGGATG
AACAGGCCATACATGATCCATTTTTATTACATAATATGGACAAAGCAGTTGCGCGCATTGAACAGGCGCTTGAAGCTGGA
GAAAAAATATTAATTTACGGTGACTATGACGCCGATGGTATTACGAGTACGACCGTCATGCTCCATACATTGCTGGACTT
AGGAGCAGATGTCGATTTTGTTATACCAAATCGCTTTGCGCATGGCTATGGCCCAAATGAGCAATTATTCCGTGAAGCGC
ATGAAAAGGGTGTGCAATTAATTATTACCGTCGATAACGGCATTAGCGGTATTGAGCCGATCCGTGTAGCGAAGGAGCTA
GGTATGGATGTCATTGTGACAGATCACCATGAGGCAGGAGAAGTGTTACCACCTGCGGATGTGATTATCCATCCACGTGT
ACCAGAGGGGCATTATCCTTTCGGTGAGCTTGCAGGTGTCGGTGTTGCCTTGAAAGTGGCACATGCCTTATATGGAGAAA
TACCTACGCATTTATATGAGCTAGCAGCAATCGGCACAATTGCCGACTTAGTTCCTTTAGTCGATGAAAATCGCTATATC
GTTAAGCAAGGAATTAAGCATTTACGCCAGTCACAAAGCCCGTGGGTTGAAGCTTTTTGTAAAGTAGCAAGTGCGAAGCA
AGCAGAAATTAACGAGGAAACGATTGGCTTTTATTTTGGACCACGCTTGAATGCCATTGGGCGCCTCGGAGATGCAATGC
CAGGTGTCCACTTTATGAAGAGTGAAGATATGGAAACAGCGAAGGAGCTAGCTGAGCTGCTAAATAGTAAAAATGCGGAG
CGTAAAAATATTGTTGCGACTATTACGGAAGAAGCAGTTGCTATGATTGAGTCAGATGACAAGCTAAAAAATGCGCATGT
GTTAGTTGTGGCACAGGAAGGCTGGAATCCAGGTGTTGTAGGAATTGTTGCTTCAATGCTTGTTGAACAATACTATCGAC
CAACAATTGTGCTATCACTTGATACAGAGAAGGGGACAGCGAAAGGCTCAGCCCGCAGTATCGAGGGCTTCCATTTATTC
AACGAGCTAGCAAAAAATCGCGATATCTTGCCACATTTCGGGGGGCATCCAATGGCAGCAGGTATGACCTTAGCAGCAGC
GCATGTAGAGCAGCTACAAATGCGTTTAAATGAGCAGGCAAAGGCTTGTTTAACAGAGGAACAGCTCATTCCGAAGCTCA
CAATTGATATTCCTCTAGAGTTAAGTGAGATCACAGTAGAGGCAATTGAAGAAATCGGGCAGCTCGGTCCATTCGGTACA
GATTTTCCAAAGCCTGTTTTCGCGTTAGAGCAAGTAAAGGTAAGTGCCATGCGTAAAATTGGCGCAAATGAAAATCATTT
AAAATTAGAGCTGGATGATGGCTATTGTACGATGGATGCAGTTGGCTTTAACAAAGGCTATTTATTTAATGAAATATCCT
ATGGTGTCGCTTTATCTTTTGTTGGTGATTTACAAATTAATGAATGGCAAAACCGCAAAAAGCCACAATTTATGGTACAG
GATGTGCAATCAAACGAATGGCAATTATTCGATTTACGTGGGAAAAAGCAGCTCGTGAATATTCCACAGGAAGAAACGCT
ATTTGTTGTTTTTGATAAGCAGCTTGTACCTTATTTCGAACAGCATGTGCCAGTAACGCTTGCGGAGCAAATAGTGGGAC
AAAAACCATATGTAGCGGTGCTTGATTTACCGCCTAATGAGGAGCGCTTAGCAGAGCTACTGCAACGCTTACAGCCACAG
CGCATTTATGCCCATTTTTATACAGCCTCATCGCAGTATTTTAGTGGCATGCCAACGCGCCAGCACTTTAGCTGGTACTA
TGGCTTTTTAAAGAAGCGCCCGAACTTTGCTTTACAGCAGCATATCGAGCCACTTGCGAAGCATATTGGGCTAAATATTG
ACGTAATTAATTTTATGACAAAGGTGTTTTTTGAGTTAGGATTTGTTACAATAGAGAATGGTCTGACGACAGTCGTTGAA
AGTGCACCCAAACAGGCATTGGAGACAGCTCCGTCATACAAAGAACGTTCAGCACAAATACAATTAGAGCAAAAGCTGTT
ATATGCAACATATAGTGAGCTAAAGCAATGGTTAGATGGACAAATGTCTAGGGAGGACTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-758)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(314-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.78

100

0.496