Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R6U80_RS11155 Genome accession   NZ_CP137623
Coordinates   2263061..2263999 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis strain NCK401     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258061..2268999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS11130 (R6U80_11130) frr 2258178..2258735 (-) 558 WP_004254618.1 ribosome recycling factor -
  R6U80_RS11135 (R6U80_11135) pyrH 2258948..2259664 (-) 717 WP_021464089.1 UMP kinase -
  R6U80_RS11140 (R6U80_11140) - 2259749..2260201 (-) 453 WP_010906263.1 hypothetical protein -
  R6U80_RS11145 (R6U80_11145) - 2260335..2261522 (-) 1188 WP_015427114.1 acetate kinase -
  R6U80_RS11150 (R6U80_11150) - 2261679..2262866 (-) 1188 WP_004254593.1 acetate kinase -
  R6U80_RS11155 (R6U80_11155) comYH 2263061..2263999 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  R6U80_RS11160 (R6U80_11160) - 2264092..2264343 (-) 252 WP_004254583.1 DUF3165 family protein -
  R6U80_RS11165 (R6U80_11165) typA 2264444..2266276 (-) 1833 WP_025016832.1 translational GTPase TypA -
  R6U80_RS11170 (R6U80_11170) - 2266464..2266922 (-) 459 WP_012898521.1 hypothetical protein -
  R6U80_RS11175 (R6U80_11175) - 2266937..2267710 (-) 774 WP_313791899.1 hypothetical protein -
  R6U80_RS11180 (R6U80_11180) - 2268047..2268673 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=899413 R6U80_RS11155 WP_012898520.1 2263061..2263999(-) (comYH) [Lactococcus lactis strain NCK401]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=899413 R6U80_RS11155 WP_012898520.1 2263061..2263999(-) (comYH) [Lactococcus lactis strain NCK401]
ATGGATATGGAAAAAGTAGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487