Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   R6U76_RS15665 Genome accession   NZ_CP137622
Coordinates   3176752..3179184 (-) Length   810 a.a.
NCBI ID   WP_319839393.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain Lm01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3171752..3184184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U76_RS15655 (R6U76_15655) corA 3173761..3174726 (-) 966 WP_004226828.1 magnesium/cobalt transporter CorA -
  R6U76_RS15660 (R6U76_15660) hpaB 3175195..3176628 (-) 1434 WP_115674135.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  R6U76_RS15665 (R6U76_15665) recD2 3176752..3179184 (-) 2433 WP_319839393.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R6U76_RS15670 (R6U76_15670) hisA 3179374..3180141 (+) 768 WP_048392137.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  R6U76_RS15675 (R6U76_15675) - 3180138..3180425 (+) 288 WP_048392136.1 hypothetical protein -
  R6U76_RS15680 (R6U76_15680) - 3180968..3181717 (+) 750 WP_048392669.1 GTP pyrophosphokinase family protein -
  R6U76_RS15685 (R6U76_15685) - 3181807..3183252 (-) 1446 WP_319839394.1 MDR family MFS transporter -
  R6U76_RS15690 (R6U76_15690) - 3183425..3184084 (-) 660 WP_054550057.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90670.02 Da        Isoelectric Point: 4.7787

>NTDB_id=899368 R6U76_RS15665 WP_319839393.1 3176752..3179184(-) (recD2) [Lysinibacillus capsici strain Lm01]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEQVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVENEGMQEPVSVEPKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=899368 R6U76_RS15665 WP_319839393.1 3176752..3179184(-) (recD2) [Lysinibacillus capsici strain Lm01]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAGATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCTAATGCACTCCGTGTTATTTTAGAAGATCCTA
GTGCCCTCGATGCTGTTCCGCGTCTATCCGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAGATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTGATTGAAGATGTGGAAGGGGTGGGTTTCTTTCGAGCCGACGAGC
TAGGTGCGAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTTTATCTAGATGCAGAACAGGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATATCTCAAGCCTGTATCGGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTGCCATCTCTCTATTTTTCGGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTTTATGCAAAGCTTCATGGGCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
CCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGGGAAGTAACAGGTAAGCTGATTATCGTGG
ATGAAATGTCAATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTACCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCGCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCAGACCAAGTTGCCAACGTTGTAACTCAA
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTGTTGGCGCCCATGTATAAAGGACCAGCTGG
TATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTCTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAGGCGAAAGAGACGATCGAAAAACAAGATTTACTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAACCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGCGGTGAACCAGATGTGCTTGCGGATGGTTTACAACGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGAAAATGAAG
GGATGCAGGAGCCGGTTTCCGTTGAACCAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.451

100

0.528