Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   R6M76_RS07655 Genome accession   NZ_CP137608
Coordinates   1627378..1628208 (-) Length   276 a.a.
NCBI ID   WP_318151339.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain C2-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1622378..1633208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6M76_RS07635 (R6M76_07635) - 1623508..1624464 (+) 957 WP_318151336.1 DhaKLM operon coactivator DhaQ -
  R6M76_RS07640 (R6M76_07640) dhaS 1624465..1624998 (-) 534 WP_318151337.1 dihydroxyacetone kinase transcriptional activator DhaS -
  R6M76_RS07645 (R6M76_07645) brnQ 1625135..1626517 (-) 1383 WP_318151338.1 branched-chain amino acid transport system II carrier protein -
  R6M76_RS07650 (R6M76_07650) - 1627056..1627322 (+) 267 WP_003701014.1 hypothetical protein -
  R6M76_RS07655 (R6M76_07655) endA 1627378..1628208 (-) 831 WP_318151339.1 DNA/RNA non-specific endonuclease Machinery gene
  R6M76_RS07660 (R6M76_07660) - 1628576..1629178 (+) 603 WP_318151340.1 nitroreductase family protein -
  R6M76_RS07665 (R6M76_07665) - 1629232..1631163 (-) 1932 WP_318151341.1 heavy metal translocating P-type ATPase -
  R6M76_RS07670 (R6M76_07670) - 1631313..1631627 (+) 315 WP_034982423.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30465.81 Da        Isoelectric Point: 10.4970

>NTDB_id=899301 R6M76_RS07655 WP_318151339.1 1627378..1628208(-) (endA) [Ligilactobacillus salivarius strain C2-1]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVVNSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=899301 R6M76_RS07655 WP_318151339.1 1627378..1628208(-) (endA) [Ligilactobacillus salivarius strain C2-1]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
CGTGGGAGTTAATACAAATCATATCAGTACACCTTTTAATAATGAAGTTGTGAATAGCAGTACATATAATAAGAAAGACT
ACACACCTACAGAGGAGCAGGCGAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACCGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCACTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489