Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   R5H38_RS05935 Genome accession   NZ_CP137602
Coordinates   1154694..1155533 (-) Length   279 a.a.
NCBI ID   WP_318150366.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1149694..1160533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS05920 pheT 1149832..1152231 (-) 2400 WP_318150365.1 phenylalanine--tRNA ligase subunit beta -
  R5H38_RS05925 - 1152233..1152754 (-) 522 WP_318151024.1 GNAT family N-acetyltransferase -
  R5H38_RS05930 pheS 1153399..1154442 (-) 1044 WP_174845671.1 phenylalanine--tRNA ligase subunit alpha -
  R5H38_RS05935 endA 1154694..1155533 (-) 840 WP_318150366.1 DNA/RNA non-specific endonuclease Machinery gene
  R5H38_RS05940 - 1155563..1155754 (-) 192 WP_130554299.1 DNA-directed RNA polymerase subunit beta -
  R5H38_RS05945 murA 1155747..1157030 (-) 1284 WP_318150367.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  R5H38_RS05950 - 1157053..1157280 (-) 228 WP_130554297.1 DUF1146 family protein -
  R5H38_RS05955 - 1157464..1158570 (-) 1107 WP_318150368.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  R5H38_RS05960 - 1158571..1159308 (-) 738 WP_217373885.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30085.36 Da        Isoelectric Point: 6.7646

>NTDB_id=899236 R5H38_RS05935 WP_318150366.1 1154694..1155533(-) (endA) [Streptococcus parasuis strain 221006]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNV

Nucleotide


Download         Length: 840 bp        

>NTDB_id=899236 R5H38_RS05935 WP_318150366.1 1154694..1155533(-) (endA) [Streptococcus parasuis strain 221006]
ATGGCGAAGAAAAACGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCAGTATTGACAGAAGATGTAAAAAAGCAACTAGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGACGTACATCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGACAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACGGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGTGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.403

90.681

0.602
  endA Streptococcus pneumoniae D39

66.403

90.681

0.602
  endA Streptococcus pneumoniae R6

66.403

90.681

0.602
  endA Streptococcus pneumoniae TIGR4

66.403

90.681

0.602