Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R5H38_RS03095 Genome accession   NZ_CP137602
Coordinates   595627..596430 (+) Length   267 a.a.
NCBI ID   WP_217374822.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 590627..601430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS03070 - 590989..591687 (-) 699 WP_217374819.1 amino acid ABC transporter permease -
  R5H38_RS03075 - 591701..592540 (-) 840 WP_318150841.1 transporter substrate-binding domain-containing protein -
  R5H38_RS03080 - 592550..593311 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  R5H38_RS03085 micA 593574..594278 (+) 705 WP_024391260.1 response regulator YycF Regulator
  R5H38_RS03090 micB 594271..595620 (+) 1350 WP_217469406.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R5H38_RS03095 vicX 595627..596430 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  R5H38_RS03100 pbp2b 596749..598782 (+) 2034 WP_412080675.1 penicillin-binding protein PBP2B -
  R5H38_RS03105 recR 598791..599387 (+) 597 WP_172036408.1 recombination mediator RecR -
  R5H38_RS03110 - 599496..600542 (+) 1047 WP_318150842.1 D-alanine--D-alanine ligase -
  R5H38_RS03115 - 600655..601035 (+) 381 WP_172025425.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29611.58 Da        Isoelectric Point: 5.3289

>NTDB_id=899229 R5H38_RS03095 WP_217374822.1 595627..596430(+) (vicX) [Streptococcus parasuis strain 221006]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTTKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=899229 R5H38_RS03095 WP_217374822.1 595627..596430(+) (vicX) [Streptococcus parasuis strain 221006]
ATGATCGGAACTGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTAGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGTTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCACTAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACAGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772