Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ABD410_RS08785 Genome accession   NZ_CP155740
Coordinates   1767573..1768247 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain 1851/03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762573..1773247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD410_RS08770 (ABD410_08740) - 1764211..1765599 (-) 1389 WP_010922717.1 HAMP domain-containing sensor histidine kinase -
  ABD410_RS08775 (ABD410_08745) - 1765596..1766249 (-) 654 WP_023612192.1 response regulator transcription factor -
  ABD410_RS08780 (ABD410_08750) - 1766343..1767560 (-) 1218 WP_002993552.1 ABC transporter permease -
  ABD410_RS08785 (ABD410_08755) amiE 1767573..1768247 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  ABD410_RS08790 (ABD410_08760) - 1768234..1769502 (-) 1269 WP_023612189.1 efflux RND transporter periplasmic adaptor subunit -
  ABD410_RS08795 (ABD410_08765) - 1769927..1770211 (-) 285 WP_002982442.1 hypothetical protein -
  ABD410_RS08800 (ABD410_08770) - 1770360..1770656 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  ABD410_RS08805 (ABD410_08775) - 1770789..1772684 (-) 1896 WP_023612194.1 coagulase domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=898668 ABD410_RS08785 WP_002982458.1 1767573..1768247(-) (amiE) [Streptococcus pyogenes strain 1851/03]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=898668 ABD410_RS08785 WP_002982458.1 1767573..1768247(-) (amiE) [Streptococcus pyogenes strain 1851/03]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGCAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366