Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABD406_RS09135 Genome accession   NZ_CP155738
Coordinates   1814422..1815690 (+) Length   422 a.a.
NCBI ID   WP_023611869.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1510/08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809422..1820690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD406_RS09110 (ABD406_09080) - 1809602..1810339 (-) 738 WP_023611865.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ABD406_RS09115 (ABD406_09085) prmA 1810339..1811292 (-) 954 WP_023611862.1 50S ribosomal protein L11 methyltransferase -
  ABD406_RS09120 (ABD406_09090) - 1811363..1811833 (-) 471 WP_023611836.1 DUF3013 family protein -
  ABD406_RS09125 (ABD406_09095) pabB 1812033..1813790 (+) 1758 WP_023611870.1 aminodeoxychorismate synthase component I -
  ABD406_RS09130 (ABD406_09100) - 1813823..1814389 (+) 567 WP_021733904.1 aminodeoxychorismate/anthranilate synthase component II -
  ABD406_RS09135 (ABD406_09105) rarA 1814422..1815690 (+) 1269 WP_023611869.1 replication-associated recombination protein A Machinery gene
  ABD406_RS09150 (ABD406_09120) - 1816187..1816627 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  ABD406_RS09155 (ABD406_09125) - 1816682..1817188 (+) 507 WP_023611832.1 DNA topology modulation protein -
  ABD406_RS09160 (ABD406_09130) - 1817433..1818137 (+) 705 WP_032465535.1 exotoxin beta-grasp domain-containing protein -
  ABD406_RS09165 (ABD406_09135) - 1818554..1818688 (-) 135 WP_011018269.1 hypothetical protein -
  ABD406_RS09170 (ABD406_09140) - 1818867..1820495 (+) 1629 WP_023611188.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46664.08 Da        Isoelectric Point: 6.0981

>NTDB_id=898467 ABD406_RS09135 WP_023611869.1 1814422..1815690(+) (rarA) [Streptococcus pyogenes strain 1510/08]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQCSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVEHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=898467 ABD406_RS09135 WP_023611869.1 1814422..1815690(+) (rarA) [Streptococcus pyogenes strain 1510/08]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGAGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGTCGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAACTAGTAGAACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59