Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ABEG12_RS28235 Genome accession   NZ_CP155639
Coordinates   6044911..6045435 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain TY922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6039911..6050435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG12_RS28220 (ABEG12_28220) aroB 6041027..6042133 (-) 1107 WP_009314395.1 3-dehydroquinate synthase -
  ABEG12_RS28225 (ABEG12_28225) aroK 6042183..6042701 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ABEG12_RS28230 (ABEG12_28230) pilQ 6042713..6044857 (-) 2145 WP_033995309.1 type 4a pilus secretin PilQ Machinery gene
  ABEG12_RS28235 (ABEG12_28235) comL/pilP 6044911..6045435 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABEG12_RS28240 (ABEG12_28240) pilO 6045432..6046055 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEG12_RS28245 (ABEG12_28245) pilN 6046052..6046648 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABEG12_RS28250 (ABEG12_28250) pilM 6046648..6047712 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ABEG12_RS28255 (ABEG12_28255) - 6047897..6050368 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=897708 ABEG12_RS28235 WP_003095836.1 6044911..6045435(-) (comL/pilP) [Pseudomonas aeruginosa strain TY922]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=897708 ABEG12_RS28235 WP_003095836.1 6044911..6045435(-) (comL/pilP) [Pseudomonas aeruginosa strain TY922]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362