Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEG12_RS25590 Genome accession   NZ_CP155639
Coordinates   5458966..5459391 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain TY922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5453966..5464391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG12_RS25575 (ABEG12_25575) pilX 5454536..5455123 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  ABEG12_RS25580 (ABEG12_25580) pilY1 5455135..5458620 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  ABEG12_RS25585 (ABEG12_25585) pilY2 5458622..5458969 (+) 348 WP_023098087.1 type 4a fimbrial biogenesis protein PilY2 -
  ABEG12_RS25590 (ABEG12_25590) comF 5458966..5459391 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ABEG12_RS25595 (ABEG12_25595) ispH 5459438..5460382 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABEG12_RS25600 (ABEG12_25600) fkpB 5460468..5460908 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ABEG12_RS25605 (ABEG12_25605) lspA 5460901..5461410 (-) 510 WP_003094728.1 signal peptidase II -
  ABEG12_RS25610 (ABEG12_25610) ileS 5461403..5464234 (-) 2832 WP_023092936.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=897702 ABEG12_RS25590 WP_003094721.1 5458966..5459391(+) (comF) [Pseudomonas aeruginosa strain TY922]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=897702 ABEG12_RS25590 WP_003094721.1 5458966..5459391(+) (comF) [Pseudomonas aeruginosa strain TY922]
ATGAGGACAAGACAGAAGGGCTTCACGCTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCTGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383