Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   R5H20_RS16430 Genome accession   NZ_CP137345
Coordinates   3223101..3225461 (-) Length   786 a.a.
NCBI ID   WP_006637809.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3218101..3230461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS16410 (R5H20_16410) - 3218152..3219729 (+) 1578 WP_006637805.1 SH3 domain-containing protein -
  R5H20_RS16415 (R5H20_16415) dtd 3219758..3220201 (-) 444 WP_006637806.1 D-aminoacyl-tRNA deacylase -
  R5H20_RS16420 (R5H20_16420) - 3220214..3222415 (-) 2202 WP_006637807.1 RelA/SpoT family protein -
  R5H20_RS16425 (R5H20_16425) - 3222583..3223095 (-) 513 WP_006637808.1 adenine phosphoribosyltransferase -
  R5H20_RS16430 (R5H20_16430) recJ 3223101..3225461 (-) 2361 WP_006637809.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  R5H20_RS16435 (R5H20_16435) - 3225529..3225822 (-) 294 WP_006637810.1 lipopolysaccharide assembly LapA domain-containing protein -
  R5H20_RS16440 (R5H20_16440) - 3225969..3226475 (-) 507 WP_006637811.1 cation:proton antiporter regulatory subunit -
  R5H20_RS16445 (R5H20_16445) secDF 3226607..3228832 (-) 2226 WP_006637812.1 protein translocase subunit SecDF -
  R5H20_RS16450 (R5H20_16450) - 3228872..3229168 (-) 297 WP_006637813.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88354.91 Da        Isoelectric Point: 4.9109

>NTDB_id=897600 R5H20_RS16430 WP_006637809.1 3223101..3225461(-) (recJ) [Bacillus sp. KICET-3]
MLASKMRWDVQTPDKEKVESLSGQLGITPLAASLLVMRGCDTADQAASFLHGKDVGFHDPYLLKDMEKAVRRIEQAISEH
EHIMIYGDYDADGVTSTTVLLQTLKKFSAQVDFYIPDRFKEGYGPNEAAFRQIKDQGYSLIITVDTGIAGVHEADVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCSYPFKELAGVGVAFKLAHALSGDVPEELLDLCAIGTIADLVPLHDENRHI
AKLGMAQFRKTKRPGLIALTKIAGAEIQNANEETIGFQIAPRINAVGRIDQADPAVHLLNTEDETEAIELAEEINSLNKE
RQKIVNQITEEAVEMIEEQGLDQPVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNQDDVGALRERINRQAEAVLTEEDFIPVQEVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVEDVEIEEARKIGANQNHLKLMLADGQAKLDCIGFYKGEIEESVVPGAKISLVGELSINEWNNRKKPQLMIKDA
AVKEWQLFDFRGKRTWEEQILKLDPEKRVFICFREESRAKLAGTGLRDELILIRGEEDAVRIDLHNRYAVFIDTPQSIDI
FDHVINGKRLERIYLIFTQTDDHFFSTFPTRDYFKWYYAFLLKRGSFDLVKYGAELAKHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYGAAKRDLTDSETYRKKQRLIELEQKLLYSSADELKQWLSKRMDESSEAYESMRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=897600 R5H20_RS16430 WP_006637809.1 3223101..3225461(-) (recJ) [Bacillus sp. KICET-3]
ATGTTAGCGTCAAAAATGCGTTGGGATGTGCAAACACCCGACAAAGAAAAGGTGGAGTCGCTCTCCGGACAATTGGGTAT
CACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGCTGCGATACAGCTGATCAAGCAGCTTCGTTTTTGCACGGCAAGG
ATGTCGGTTTTCATGACCCATATCTGCTTAAAGATATGGAAAAAGCAGTTCGGCGAATCGAACAGGCTATTTCAGAACAT
GAACATATCATGATTTATGGTGATTATGATGCGGACGGTGTGACAAGCACGACCGTTCTTTTGCAGACTTTAAAAAAATT
TTCAGCACAAGTCGATTTCTATATACCCGACCGTTTTAAAGAAGGCTACGGCCCTAATGAAGCGGCATTCCGTCAAATAA
AAGATCAGGGATATTCGTTGATCATCACTGTGGATACTGGGATTGCCGGCGTACATGAAGCAGATGTCGCCAAGGAGCTC
GGCATCGATCTGATTATTACAGACCACCACGAGCCCGGTCCGGTATTGCCTGACGCGTATGCGATCATCCATCCGAAGCA
GCCCGGCTGCAGCTACCCTTTTAAAGAACTGGCGGGAGTCGGGGTGGCTTTTAAGCTTGCCCATGCCCTTAGCGGGGACG
TTCCAGAGGAGCTGCTCGACTTATGCGCCATCGGTACGATTGCCGATCTCGTACCTCTTCATGATGAAAACAGGCACATC
GCCAAGCTTGGAATGGCGCAGTTCAGGAAAACAAAGCGTCCTGGTTTAATCGCGCTGACCAAGATAGCGGGTGCGGAGAT
TCAAAACGCGAATGAAGAAACGATCGGTTTTCAAATTGCTCCACGCATTAATGCAGTCGGCAGGATTGACCAGGCTGACC
CGGCCGTTCATCTGTTGAATACTGAGGACGAAACAGAAGCGATCGAGCTGGCCGAGGAAATCAACAGCCTGAATAAAGAG
CGCCAAAAAATCGTCAACCAGATCACAGAGGAAGCGGTTGAAATGATAGAGGAGCAGGGGCTTGACCAGCCTGTGATCGT
TGCCGCCCGGCCCGGCTGGAACCCCGGAGTGGTCGGAATCGTCGCTTCCAAGCTTGTCGAACGGTTTTACCGGCCGGCCA
TCGTGCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGATCAGCACGAAGCATCAAAGGCTTTGACCTGTTTCAAAAC
CTTTCAGAATGCCGGGATATCCTTCCCCACTTCGGCGGCCATCCGATGGCTGCCGGGATGACGCTGAATCAGGATGACGT
CGGCGCCTTAAGAGAAAGAATCAACAGGCAGGCCGAAGCTGTGTTAACAGAGGAAGATTTCATTCCCGTACAGGAGGTTG
ATCTTTGCTGCCGATTGGAGGATATAACGGTTGACAGCATTGCCGAAATGAACATGCTGGCTCCATTTGGCACGGGAAAT
CCAAAGCCGTTTGTGCTTGTCGAAGACGTCGAAATTGAGGAAGCGAGAAAAATCGGCGCCAATCAGAATCATCTGAAGCT
CATGCTGGCCGACGGTCAGGCGAAGCTGGACTGCATCGGCTTTTATAAAGGCGAAATCGAAGAGAGCGTCGTTCCCGGAG
CAAAGATTTCTCTTGTGGGCGAATTGTCGATCAATGAATGGAACAACAGAAAAAAACCGCAGCTGATGATAAAAGATGCG
GCTGTGAAAGAATGGCAGCTGTTTGATTTTAGAGGAAAGCGGACATGGGAAGAACAAATCCTGAAACTGGACCCGGAAAA
ACGCGTATTCATTTGTTTTCGAGAGGAATCCAGAGCAAAACTGGCGGGTACCGGTCTTCGGGATGAGCTGATTCTGATTC
GCGGGGAAGAAGATGCAGTTCGAATCGATCTACATAATCGCTATGCGGTTTTCATTGATACGCCGCAGTCGATTGACATA
TTCGACCATGTAATAAACGGAAAGCGGCTTGAGCGGATTTATTTAATTTTCACTCAAACGGATGACCACTTTTTCTCAAC
TTTCCCGACAAGGGACTATTTTAAATGGTACTATGCTTTTCTTCTGAAGAGAGGTTCCTTCGACTTGGTCAAATACGGCG
CAGAGCTGGCCAAGCATAAGGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTGTATGGTGCCGCAAAACGGGATTTGACAGATTCTGAAACCTACCGGAAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTTTTATATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAGTAAGCGGATGG
ATGAGAGTTCTGAAGCTTACGAAAGTATGAGGAGGACATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.338

100

0.693