Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R5H20_RS09185 Genome accession   NZ_CP137345
Coordinates   1815709..1816611 (+) Length   300 a.a.
NCBI ID   WP_006638186.1    Uniprot ID   A0A7Y8RX47
Organism   Bacillus sp. KICET-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1810709..1821611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS09165 (R5H20_09165) - 1811363..1813054 (+) 1692 WP_006638190.1 hypothetical protein -
  R5H20_RS09170 (R5H20_09170) - 1813051..1813329 (+) 279 WP_006638189.1 FlhB-like flagellar biosynthesis protein -
  R5H20_RS09175 (R5H20_09175) sucC 1813506..1814666 (+) 1161 WP_006638188.1 ADP-forming succinate--CoA ligase subunit beta -
  R5H20_RS09180 (R5H20_09180) sucD 1814685..1815587 (+) 903 WP_006638187.1 succinate--CoA ligase subunit alpha -
  R5H20_RS09185 (R5H20_09185) dprA 1815709..1816611 (+) 903 WP_006638186.1 DNA-processing protein DprA Machinery gene
  R5H20_RS09190 (R5H20_09190) topA 1816817..1818892 (+) 2076 WP_006638185.1 type I DNA topoisomerase -
  R5H20_RS09195 (R5H20_09195) trmFO 1818969..1820273 (+) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  R5H20_RS09200 (R5H20_09200) xerC 1820340..1821254 (+) 915 WP_006638183.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33176.31 Da        Isoelectric Point: 9.7386

>NTDB_id=897582 R5H20_RS09185 WP_006638186.1 1815709..1816611(+) (dprA) [Bacillus sp. KICET-3]
MNDQSELLILLRLYGILSPSLLSKWWKEDPSLSLSEETSHPLKKLSNEKISASSIRKLAEKELPKAKRLIKTYSDNGIGM
IAISSPDYPACLKTIHDPPPVLFLKGKKTFLNENRLIGIVGTRDPSSYGKSVVRHLAGELSNKDWTIVSGLAKGIDGLAH
KETIRTNGKTIGVIAGGFDHIYPRENRLLARHMAESHLLVSEHLPHIKPQKWHFPMRNRLISGLTEGIVVIQGKERSGSL
ITAYQALEQGREVFAVPGSIFDQNSQGPARLIQEGAKLVAGIDDILDELPGFKVQYTDPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=897582 R5H20_RS09185 WP_006638186.1 1815709..1816611(+) (dprA) [Bacillus sp. KICET-3]
ATGAATGATCAGAGCGAGCTGTTGATTTTGCTCCGCCTGTATGGAATCCTTTCGCCTTCCCTGTTATCCAAATGGTGGAA
GGAAGATCCTTCTTTATCGCTTTCAGAAGAAACATCCCATCCTCTAAAAAAGCTGTCAAATGAAAAGATCAGTGCAAGCT
CCATCCGTAAGCTCGCCGAAAAAGAGCTTCCAAAAGCAAAACGGCTGATAAAAACCTACAGCGATAACGGAATCGGCATG
ATCGCGATTTCGTCCCCTGACTATCCAGCCTGTCTGAAAACGATTCACGATCCGCCCCCCGTTCTTTTTTTAAAAGGAAA
GAAAACGTTTCTTAATGAAAACCGCCTTATCGGTATCGTGGGTACCCGAGATCCTTCATCATACGGAAAAAGCGTTGTCC
GCCACCTTGCCGGGGAGCTCAGCAATAAAGACTGGACGATCGTCAGCGGGCTCGCAAAAGGGATTGACGGTCTTGCCCAC
AAGGAGACCATCCGTACAAACGGAAAAACGATCGGCGTCATCGCCGGCGGATTCGACCACATATATCCCCGTGAAAACCG
TCTTCTTGCCCGGCACATGGCGGAAAGTCATTTGCTGGTGTCAGAGCACCTTCCCCATATAAAACCTCAAAAATGGCACT
TTCCGATGAGAAATCGGCTGATCAGCGGCTTAACCGAAGGAATCGTTGTCATTCAAGGCAAAGAAAGAAGCGGCTCGCTC
ATTACCGCCTATCAGGCGCTGGAACAGGGAAGAGAGGTATTTGCGGTGCCGGGTTCAATTTTTGACCAGAACTCCCAAGG
CCCGGCCAGATTGATCCAGGAAGGGGCGAAACTTGTAGCCGGCATTGATGACATTCTCGACGAACTTCCGGGTTTTAAAG
TGCAATATACGGATCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RX47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

58.194

99.667

0.58