Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   R6H26_RS18980 Genome accession   NZ_CP137338
Coordinates   3967700..3968800 (+) Length   366 a.a.
NCBI ID   WP_404784632.1    Uniprot ID   -
Organism   Altericista sp. CCNU0014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3962700..3973800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6H26_RS18960 (R6H26_18830) - 3962934..3963479 (+) 546 WP_404784626.1 Tfp pilus assembly protein FimT/FimU -
  R6H26_RS18965 (R6H26_18835) - 3963460..3963933 (+) 474 WP_404784627.1 PilW family protein -
  R6H26_RS18970 (R6H26_18840) - 3963943..3965022 (+) 1080 WP_404784629.1 PilW family protein -
  R6H26_RS18975 (R6H26_18845) - 3965026..3967293 (+) 2268 WP_404784631.1 hypothetical protein -
  R6H26_RS18980 (R6H26_18850) pilM 3967700..3968800 (+) 1101 WP_404784632.1 type IV pilus assembly protein PilM Machinery gene
  R6H26_RS18985 (R6H26_18855) - 3968805..3969578 (+) 774 WP_404784634.1 PilN domain-containing protein -
  R6H26_RS18990 (R6H26_18860) - 3969575..3970324 (+) 750 WP_404784636.1 YlbF family regulator -
  R6H26_RS18995 (R6H26_18865) - 3970383..3972470 (+) 2088 WP_404784638.1 AMIN domain-containing protein -
  R6H26_RS19000 (R6H26_18870) - 3972608..3973261 (-) 654 WP_404784640.1 LON peptidase substrate-binding domain-containing protein -
  R6H26_RS19005 (R6H26_18875) rpsJ 3973458..3973781 (-) 324 WP_404784641.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39837.75 Da        Isoelectric Point: 4.2061

>NTDB_id=897511 R6H26_RS18980 WP_404784632.1 3967700..3968800(+) (pilM) [Altericista sp. CCNU0014]
MVTSLNFFSKTSQRLGVELTPERVNIVQLEQNKKGIKVDAFISLPLPEGAYQDGRIADPDAIADVIRQGLESKKIKARKV
VSAIPVGEAVIRLIRLPAELDDFELRDMVLNQEAALYLPFSREDADVDFQKLDTEIDEDGIERVEVLLVATPKDITDTYL
NVFEQAGLQLKVLEVSSFALLRTLRNQLLQFATGEAVALVNIDCDGSEISIVLDGVPQFNRKIPIGTLQLQSALSRAMNL
PSSMGADLLQGMSVPLTVGATETMAGDTTNPSAAAILRMLGDLSDELRRSIDFYLNQGDNLEISQVFLSGVGAGIGQIDE
FLSMRLGYPAILIDPIENLNIQSFGDIPAAQRPALGIVMGLGLREV

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=897511 R6H26_RS18980 WP_404784632.1 3967700..3968800(+) (pilM) [Altericista sp. CCNU0014]
GTGGTTACTTCACTCAACTTTTTTTCTAAAACTAGTCAGCGCTTGGGGGTGGAACTCACGCCCGAACGCGTTAATATTGT
CCAGCTCGAGCAGAATAAAAAGGGGATTAAGGTCGATGCCTTTATCTCTCTTCCCTTACCGGAAGGCGCTTATCAAGATG
GACGGATCGCTGACCCCGATGCGATCGCAGACGTGATTCGCCAGGGCCTTGAAAGCAAAAAAATCAAAGCTCGAAAAGTC
GTCAGCGCCATTCCCGTCGGAGAAGCCGTCATTCGGCTCATTCGGCTCCCTGCCGAGCTAGACGACTTTGAATTGAGGGA
CATGGTGCTCAATCAAGAAGCAGCCCTTTATCTGCCCTTTTCGCGCGAAGATGCGGACGTCGACTTTCAAAAGCTAGACA
CCGAAATCGACGAAGATGGCATCGAGCGCGTTGAAGTTCTTTTGGTGGCAACGCCCAAGGACATCACAGACACCTACCTC
AACGTCTTCGAACAAGCGGGGTTGCAGCTAAAAGTCTTGGAAGTAAGCAGCTTTGCCCTCCTTCGCACCCTGCGCAATCA
GCTTTTGCAGTTTGCCACAGGCGAAGCAGTGGCCCTAGTCAATATAGACTGCGACGGCTCCGAAATTAGCATTGTCCTAG
ACGGCGTGCCCCAATTCAACCGTAAAATCCCCATTGGAACTTTACAGCTTCAAAGCGCCTTGAGTCGCGCAATGAACTTG
CCTAGCTCAATGGGAGCCGATCTGTTGCAAGGCATGAGCGTCCCCTTAACCGTAGGGGCGACTGAAACCATGGCTGGAGA
TACAACGAACCCAAGTGCAGCCGCAATTTTACGGATGCTGGGCGATCTGTCCGACGAACTGCGACGCTCCATCGATTTCT
ATCTAAACCAAGGCGATAACCTGGAAATCAGTCAAGTATTTTTGTCTGGAGTGGGTGCGGGCATTGGCCAAATCGACGAA
TTCTTGTCCATGCGGCTGGGCTATCCTGCTATTTTAATCGACCCCATCGAAAACCTTAACATTCAAAGTTTTGGGGATAT
TCCTGCGGCGCAGCGCCCTGCCTTAGGAATTGTGATGGGTCTAGGATTACGAGAGGTTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

51.24

99.18

0.508