Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | ABC812_RS08345 | Genome accession | NZ_CP155537 |
| Coordinates | 1643503..1644774 (+) | Length | 423 a.a. |
| NCBI ID | WP_001113205.1 | Uniprot ID | Q8DNP1 |
| Organism | Streptococcus pneumoniae strain DP1322 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1638503..1649774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC812_RS08310 (ABC812_08305) | - | 1639568..1639996 (-) | 429 | WP_000418176.1 | NUDIX hydrolase | - |
| ABC812_RS08315 (ABC812_08310) | - | 1639962..1641065 (-) | 1104 | WP_000719717.1 | site-2 protease family protein | - |
| ABC812_RS08320 (ABC812_08315) | - | 1641084..1641554 (-) | 471 | WP_000257105.1 | DUF3013 family protein | - |
| ABC812_RS08325 (ABC812_08320) | - | 1641845..1642297 (-) | 453 | WP_000961810.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ABC812_RS08330 (ABC812_08325) | - | 1642334..1642513 (-) | 180 | WP_001132285.1 | type II toxin-antitoxin system HicA family toxin | - |
| ABC812_RS08335 (ABC812_08330) | - | 1642650..1642829 (-) | 180 | WP_001809903.1 | hypothetical protein | - |
| ABC812_RS08340 (ABC812_08335) | - | 1642994..1643233 (-) | 240 | WP_000818079.1 | hypothetical protein | - |
| ABC812_RS08345 (ABC812_08340) | rarA | 1643503..1644774 (+) | 1272 | WP_001113205.1 | replication-associated recombination protein A | Machinery gene |
| ABC812_RS08355 (ABC812_08350) | - | 1645321..1646640 (-) | 1320 | WP_000608887.1 | glycoside hydrolase family 32 protein | - |
| ABC812_RS08360 (ABC812_08355) | - | 1646650..1647495 (-) | 846 | WP_000819520.1 | carbohydrate ABC transporter permease | - |
| ABC812_RS08365 (ABC812_08360) | - | 1647497..1648399 (-) | 903 | WP_000032532.1 | sugar ABC transporter permease | - |
Sequence
Protein
Download Length: 423 a.a. Molecular weight: 46969.43 Da Isoelectric Point: 5.9471
>NTDB_id=897305 ABC812_RS08345 WP_001113205.1 1643503..1644774(+) (rarA) [Streptococcus pneumoniae strain DP1322]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI
Nucleotide
Download Length: 1272 bp
>NTDB_id=897305 ABC812_RS08345 WP_001113205.1 1643503..1644774(+) (rarA) [Streptococcus pneumoniae strain DP1322]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
57.518 |
99.054 |
0.57 |