Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   ABC814_RS10260 Genome accession   NZ_CP155533
Coordinates   1973651..1974604 (-) Length   317 a.a.
NCBI ID   WP_000345132.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1968651..1979604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS10230 (ABC814_10230) - 1969412..1970035 (-) 624 WP_000932637.1 hypothetical protein -
  ABC814_RS10235 (ABC814_10235) jag 1970086..1971072 (-) 987 WP_000260024.1 RNA-binding cell elongation regulator Jag/EloR -
  ABC814_RS10240 (ABC814_10240) - 1971091..1971915 (-) 825 WP_000727911.1 membrane protein insertase YidC -
  ABC814_RS10245 (ABC814_10245) rnpA 1971890..1972261 (-) 372 WP_000739246.1 ribonuclease P protein component -
  ABC814_RS10250 (ABC814_10250) - 1972278..1972409 (-) 132 WP_000768904.1 hypothetical protein -
  ABC814_RS10255 (ABC814_10255) - 1972410..1973600 (-) 1191 WP_000167770.1 acetate kinase -
  ABC814_RS10260 (ABC814_10260) comGH 1973651..1974604 (-) 954 WP_000345132.1 class I SAM-dependent methyltransferase Machinery gene
  ABC814_RS10265 (ABC814_10265) - 1974950..1975752 (+) 803 Protein_1998 IS5 family transposase -
  ABC814_RS10270 (ABC814_10270) - 1975903..1976379 (+) 477 WP_000777686.1 GNAT family N-acetyltransferase -
  ABC814_RS10275 (ABC814_10275) comGG/cglG 1977034..1977447 (-) 414 WP_000265615.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABC814_RS10280 (ABC814_10280) comGF/cglF 1977425..1977886 (-) 462 WP_000250520.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABC814_RS10285 (ABC814_10285) comGE/cglE 1977849..1978151 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABC814_RS10290 (ABC814_10290) comGD/cglD 1978114..1978548 (-) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABC814_RS10295 (ABC814_10295) comGC/cglC 1978511..1978834 (-) 324 WP_000738628.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35661.78 Da        Isoelectric Point: 4.1925

>NTDB_id=896852 ABC814_RS10260 WP_000345132.1 1973651..1974604(-) (comGH) [Streptococcus pneumoniae strain Spn1439-106]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEMDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANANQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=896852 ABC814_RS10260 WP_000345132.1 1973651..1974604(-) (comGH) [Streptococcus pneumoniae strain Spn1439-106]
ATGGATTTTGAAAAAATTGAACAAGCCTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGACAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATCACTATCCTTGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTAACCTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAATGGATGATTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAACCAATCTAAGACTATTTTTATCCTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

54.313

98.738

0.536
  comGH Streptococcus mutans UA159

53.994

98.738

0.533