Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LDM86_RS00480 Genome accession   NZ_AP024962
Coordinates   94280..94561 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain #3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 89280..99561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS00460 (OHP003_00920) groES 89858..90214 (-) 357 WP_000671959.1 co-chaperone GroES -
  LDM86_RS00465 (OHP003_00930) dnaG 90489..92168 (+) 1680 WP_223889219.1 DNA primase -
  LDM86_RS00470 (OHP003_00940) - 92165..93217 (+) 1053 WP_223889220.1 MnmA/TRMU family protein -
  LDM86_RS00475 (OHP003_00950) - 93308..94135 (+) 828 WP_223889221.1 DUF5718 family protein -
  LDM86_RS00480 (OHP003_00960) comB2 94280..94561 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  LDM86_RS00485 (OHP003_00970) comB3 94561..94824 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  LDM86_RS00490 (OHP003_00980) comB4 94827..97190 (+) 2364 WP_223889222.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LDM86_RS00500 (OHP003_00990) - 97510..98850 (+) 1341 WP_223889223.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=89684 LDM86_RS00480 WP_001272690.1 94280..94561(+) (comB2) [Helicobacter pylori strain #3]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=89684 LDM86_RS00480 WP_001272690.1 94280..94561(+) (comB2) [Helicobacter pylori strain #3]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment