Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABC814_RS08920 Genome accession   NZ_CP155533
Coordinates   1743349..1744620 (+) Length   423 a.a.
NCBI ID   WP_001113235.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738349..1749620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS08885 (ABC814_08885) - 1739415..1739843 (-) 429 WP_000418160.1 NUDIX hydrolase -
  ABC814_RS08890 (ABC814_08890) - 1739824..1740912 (-) 1089 WP_050090480.1 site-2 protease family protein -
  ABC814_RS08895 (ABC814_08895) - 1740931..1741401 (-) 471 WP_000257098.1 DUF3013 family protein -
  ABC814_RS08900 (ABC814_08900) - 1741692..1742144 (-) 453 WP_061645121.1 type II toxin-antitoxin system HicB family antitoxin -
  ABC814_RS08905 (ABC814_08905) - 1742181..1742360 (-) 180 WP_001132281.1 type II toxin-antitoxin system HicA family toxin -
  ABC814_RS08910 (ABC814_08910) - 1742497..1742685 (-) 189 WP_001833848.1 hypothetical protein -
  ABC814_RS08915 (ABC814_08915) - 1742840..1743079 (-) 240 WP_000818079.1 hypothetical protein -
  ABC814_RS08920 (ABC814_08920) rarA 1743349..1744620 (+) 1272 WP_001113235.1 replication-associated recombination protein A Machinery gene
  ABC814_RS08930 (ABC814_08930) - 1745165..1746484 (-) 1320 WP_061645122.1 glycoside hydrolase family 32 protein -
  ABC814_RS08935 (ABC814_08935) - 1746494..1747339 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  ABC814_RS08940 (ABC814_08940) - 1747341..1748243 (-) 903 WP_000032533.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46987.40 Da        Isoelectric Point: 5.9471

>NTDB_id=896829 ABC814_RS08920 WP_001113235.1 1743349..1744620(+) (rarA) [Streptococcus pneumoniae strain Spn1439-106]
MPDNLALRMRPKTIDQVIGQEHLVGSGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=896829 ABC814_RS08920 WP_001113235.1 1743349..1744620(+) (rarA) [Streptococcus pneumoniae strain Spn1439-106]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGATCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572