Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABC810_RS02535 Genome accession   NZ_CP155532
Coordinates   471488..472759 (-) Length   423 a.a.
NCBI ID   WP_001113205.1    Uniprot ID   Q8DNP1
Organism   Streptococcus pneumoniae strain SP264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466488..477759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS02515 (ABC810_02515) - 467079..467969 (+) 891 WP_000797961.1 carbohydrate ABC transporter permease -
  ABC810_RS02520 (ABC810_02520) - 467998..469614 (+) 1617 WP_000669751.1 ABC transporter substrate-binding protein -
  ABC810_RS02525 (ABC810_02525) - 469624..470943 (+) 1320 WP_000502535.1 glycoside hydrolase family 32 protein -
  ABC810_RS02535 (ABC810_02535) rarA 471488..472759 (-) 1272 WP_001113205.1 replication-associated recombination protein A Machinery gene
  ABC810_RS02540 (ABC810_02540) - 473029..473268 (+) 240 WP_000818080.1 hypothetical protein -
  ABC810_RS02545 (ABC810_02545) - 473433..473612 (+) 180 WP_001048906.1 hypothetical protein -
  ABC810_RS02550 (ABC810_02550) - 473749..473928 (+) 180 WP_001132287.1 type II toxin-antitoxin system HicA family toxin -
  ABC810_RS02555 (ABC810_02555) - 473965..474417 (+) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  ABC810_RS02560 (ABC810_02560) - 474708..475178 (+) 471 WP_000257084.1 DUF3013 family protein -
  ABC810_RS02565 (ABC810_02565) - 475197..476285 (+) 1089 WP_000719700.1 site-2 protease family protein -
  ABC810_RS02570 (ABC810_02570) - 476266..476400 (+) 135 Protein_456 7,8-dihydro-8-oxoguanine-triphosphatase -
  ABC810_RS02575 (ABC810_02575) - 476534..477568 (+) 1035 WP_000747915.1 ATP-binding protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46969.43 Da        Isoelectric Point: 5.9471

>NTDB_id=896683 ABC810_RS02535 WP_001113205.1 471488..472759(-) (rarA) [Streptococcus pneumoniae strain SP264]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=896683 ABC810_RS02535 WP_001113205.1 471488..472759(-) (rarA) [Streptococcus pneumoniae strain SP264]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATACGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCACTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DNP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57