Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABC803_RS04010 Genome accession   NZ_CP155531
Coordinates   738311..739033 (+) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN36255     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 733311..744033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC803_RS03990 (ABC803_03990) - 733396..735018 (+) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  ABC803_RS03995 (ABC803_03995) amiA3 735219..737180 (+) 1962 WP_000748865.1 peptide ABC transporter substrate-binding protein Regulator
  ABC803_RS04000 (ABC803_04000) - 737352..737585 (+) 234 WP_000769000.1 hypothetical protein -
  ABC803_RS04005 (ABC803_04005) - 737603..738124 (+) 522 Protein_742 ABC transporter transmembrane domain-containing protein -
  ABC803_RS04010 (ABC803_04010) rcrP 738311..739033 (+) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  ABC803_RS04015 (ABC803_04015) - 739191..740285 (+) 1095 WP_000031964.1 cystathionine gamma-synthase -
  ABC803_RS04020 (ABC803_04020) - 740293..741459 (+) 1167 WP_000521384.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=896580 ABC803_RS04010 WP_001010371.1 738311..739033(+) (rcrP) [Streptococcus pneumoniae strain SN36255]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=896580 ABC803_RS04010 WP_001010371.1 738311..739033(+) (rcrP) [Streptococcus pneumoniae strain SN36255]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363