Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LLNCDO184_RS01800 Genome accession   NZ_CP155124
Coordinates   323995..325872 (+) Length   625 a.a.
NCBI ID   WP_058210988.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain NCDO184     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 318995..330872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO184_RS01780 (LLNCDO184_01770) - 319191..320462 (-) 1272 WP_063283729.1 NAD(P)/FAD-dependent oxidoreductase -
  LLNCDO184_RS01785 (LLNCDO184_01775) - 320603..321430 (+) 828 WP_010905246.1 NAD(P)H-hydrate dehydratase -
  LLNCDO184_RS01790 (LLNCDO184_01780) - 321579..321992 (+) 414 WP_010905247.1 DUF1398 domain-containing protein -
  LLNCDO184_RS01795 (LLNCDO184_01785) - 322163..323998 (+) 1836 WP_010905248.1 ABC transporter ATP-binding protein -
  LLNCDO184_RS01800 (LLNCDO184_01790) rcrQ 323995..325872 (+) 1878 WP_058210988.1 ABC transporter ATP-binding protein Regulator
  LLNCDO184_RS01805 (LLNCDO184_01795) - 325969..326622 (+) 654 WP_010905251.1 YcjF family protein -
  LLNCDO184_RS01810 (LLNCDO184_01800) - 326668..327687 (-) 1020 WP_010905252.1 Gfo/Idh/MocA family oxidoreductase -
  LLNCDO184_RS01815 (LLNCDO184_01805) - 327671..327838 (-) 168 WP_003131184.1 hypothetical protein -
  LLNCDO184_RS01820 (LLNCDO184_01810) - 328013..328489 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LLNCDO184_RS01825 (LLNCDO184_01815) - 328703..329167 (+) 465 WP_010905253.1 GyrI-like domain-containing protein -
  LLNCDO184_RS01830 (LLNCDO184_01820) - 329232..330077 (+) 846 WP_003131189.1 aldo/keto reductase -
  LLNCDO184_RS01835 (LLNCDO184_01825) - 330243..330755 (+) 513 WP_031296768.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70271.11 Da        Isoelectric Point: 8.7506

>NTDB_id=896062 LLNCDO184_RS01800 WP_058210988.1 323995..325872(+) (rcrQ) [Lactococcus lactis subsp. lactis strain NCDO184]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMTKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFVNNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=896062 LLNCDO184_RS01800 WP_058210988.1 323995..325872(+) (rcrQ) [Lactococcus lactis subsp. lactis strain NCDO184]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGACTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGACATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTGTCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAATGGAT
TATATGCCAGCCTTTATAATTCACAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.641

94.88

0.386