Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4712_RS10880 Genome accession   NZ_CP137110
Coordinates   1374233..1374700 (+) Length   155 a.a.
NCBI ID   WP_044812778.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2041     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369233..1379700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS06970 - 1369591..1370199 (+) 609 WP_000083614.1 hypothetical protein -
  R4712_RS06975 - 1370192..1370602 (+) 411 WP_000595762.1 hypothetical protein -
  R4712_RS06980 ply 1370613..1372022 (+) 1410 WP_001284356.1 cholesterol-dependent cytolysin pneumolysin -
  R4712_RS06985 - 1372905..1373621 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4712_RS06990 - 1373745..1374216 (+) 472 Protein_1356 MarR family winged helix-turn-helix transcriptional regulator -
  R4712_RS10880 rcrP 1374233..1374700 (+) 468 WP_044812778.1 ABC transporter transmembrane domain-containing protein Regulator
  R4712_RS10885 rcrP 1374717..1375055 (+) 339 WP_055327607.1 ABC transporter transmembrane domain-containing protein Regulator
  R4712_RS07000 - 1375248..1376093 (+) 846 Protein_1359 ATP-binding cassette domain-containing protein -
  R4712_RS07005 - 1376159..1376521 (+) 363 WP_000078804.1 DUF2200 domain-containing protein -
  R4712_RS07010 - 1376518..1377021 (+) 504 WP_000800943.1 phosphatase PAP2 family protein -
  R4712_RS07015 - 1377135..1377581 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4712_RS07020 - 1377586..1378260 (+) 675 WP_044812776.1 LiaF transmembrane domain-containing protein -
  R4712_RS07025 - 1378421..1378612 (+) 192 WP_000291826.1 cell wall-binding protein -
  R4712_RS07030 - 1378637..1378699 (+) 63 WP_219300018.1 hypothetical protein -
  R4712_RS07035 - 1378897..1379196 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R4712_RS07040 - 1379193..1379510 (+) 318 WP_000615767.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17423.60 Da        Isoelectric Point: 5.7969

>NTDB_id=895913 R4712_RS10880 WP_044812778.1 1374233..1374700(+) (rcrP) [Streptococcus pneumoniae strain 16H2041]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNP

Nucleotide


Download         Length: 468 bp        

>NTDB_id=895913 R4712_RS10880 WP_044812778.1 1374233..1374700(+) (rcrP) [Streptococcus pneumoniae strain 16H2041]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACCCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.516

98.71

0.568