Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R4711_RS07245 Genome accession   NZ_CP137107
Coordinates   1421549..1422532 (+) Length   327 a.a.
NCBI ID   WP_224757765.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15H4024     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416549..1427532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS07220 - 1416630..1417040 (+) 411 WP_000595757.1 hypothetical protein -
  R4711_RS07225 ply 1417051..1418466 (+) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R4711_RS07230 - 1419347..1420063 (+) 717 WP_050263719.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4711_RS07235 - 1420187..1420656 (+) 470 Protein_1401 MarR family winged helix-turn-helix transcriptional regulator -
  R4711_RS07240 - 1420673..1421494 (+) 822 Protein_1402 ABC transporter permease -
  R4711_RS07245 rcrQ 1421549..1422532 (+) 984 WP_224757765.1 ABC transporter ATP-binding protein Regulator
  R4711_RS07250 - 1422598..1422960 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R4711_RS07255 - 1422957..1423460 (+) 504 WP_000800947.1 phosphatase PAP2 family protein -
  R4711_RS07260 - 1423574..1424020 (+) 447 WP_050263722.1 LytTR family DNA-binding domain-containing protein -
  R4711_RS07265 - 1424026..1424700 (+) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  R4711_RS07270 - 1424861..1425052 (+) 192 WP_000291826.1 cell wall-binding protein -
  R4711_RS07275 - 1425059..1425139 (+) 81 WP_223200442.1 hypothetical protein -
  R4711_RS07280 - 1425377..1425676 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R4711_RS07285 - 1425673..1425990 (+) 318 WP_000615767.1 thioredoxin family protein -
  R4711_RS07290 ytpR 1426006..1426635 (+) 630 WP_000578314.1 YtpR family tRNA-binding protein -
  R4711_RS07295 - 1426668..1427429 (+) 762 WP_001107757.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36140.86 Da        Isoelectric Point: 4.4298

>NTDB_id=895659 R4711_RS07245 WP_224757765.1 1421549..1422532(+) (rcrQ) [Streptococcus pneumoniae strain 15H4024]
MVSAKRINQVLDLHSSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSIGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIARALLKDAP
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=895659 R4711_RS07245 WP_224757765.1 1421549..1422532(+) (rcrQ) [Streptococcus pneumoniae strain 15H4024]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGAC
AGCTCATGCTGGTCAAAAGGTTGCCATTGTTGGGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGGGAAGTATTCACATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(52-102)

ABC transporter (ABC_tran)

(104-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

68.502

0.554