Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LDO07_RS07430 Genome accession   NZ_AP024937
Coordinates   1385679..1386812 (+) Length   377 a.a.
NCBI ID   WP_143586068.1    Uniprot ID   -
Organism   Thermus thermophilus strain AK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380679..1391812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS07410 (TthAK1_14580) - 1381558..1382403 (+) 846 WP_223965605.1 transposase -
  LDO07_RS07415 (TthAK1_14590) - 1382507..1383943 (+) 1437 WP_223965606.1 HD domain-containing phosphohydrolase -
  LDO07_RS07420 (TthAK1_14600) - 1383994..1384485 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  LDO07_RS07425 (TthAK1_14610) - 1384540..1385544 (+) 1005 WP_223965607.1 homoisocitrate dehydrogenase -
  LDO07_RS07430 (TthAK1_14620) pilM 1385679..1386812 (+) 1134 WP_143586068.1 type IV pilus assembly protein PilM Machinery gene
  LDO07_RS07435 (TthAK1_14630) pilN 1386805..1387428 (+) 624 WP_011228637.1 competence protein Machinery gene
  LDO07_RS07440 (TthAK1_14640) pilO 1387418..1387999 (+) 582 WP_143586070.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO07_RS07445 (TthAK1_14650) pilW 1387996..1388886 (+) 891 WP_143586072.1 competence protein Machinery gene
  LDO07_RS07450 (TthAK1_14660) pilQ 1388883..1391156 (+) 2274 WP_223965608.1 secretin N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41334.90 Da        Isoelectric Point: 4.3805

>NTDB_id=89562 LDO07_RS07430 WP_143586068.1 1385679..1386812(+) (pilM) [Thermus thermophilus strain AK1]
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLVEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATIPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEPLD

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=89562 LDO07_RS07430 WP_143586068.1 1385679..1386812(+) (pilM) [Thermus thermophilus strain AK1]
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGGTGGAAGGGA
TGGTGGCCGAGCCTGCCGCGTTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTCCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACCCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCATCCCCACCGAGGACGAGGAACTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAACTCACCCAGGAGCTCCGCCGTA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGTCGGAGCAACTCCAGGAGATCGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Thermus thermophilus HB27

99.204

100

0.992

Multiple sequence alignment