Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R4710_RS11230 Genome accession   NZ_CP137101
Coordinates   735877..736908 (-) Length   343 a.a.
NCBI ID   WP_000506425.1    Uniprot ID   A0A9P1QFQ7
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 730877..741908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS03850 - 731015..731776 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R4710_RS03855 ytpR 731818..732444 (-) 627 WP_000578289.1 YtpR family tRNA-binding protein -
  R4710_RS03860 - 732460..732777 (-) 318 WP_000615772.1 thioredoxin family protein -
  R4710_RS03865 - 732774..733073 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R4710_RS03870 - 733271..733333 (-) 63 WP_219300018.1 hypothetical protein -
  R4710_RS03875 - 733358..733549 (-) 192 WP_000291826.1 cell wall-binding protein -
  R4710_RS03880 - 733710..734384 (-) 675 WP_000725719.1 LiaF transmembrane domain-containing protein -
  R4710_RS03885 - 734389..734835 (-) 447 WP_000776596.1 LytTR family DNA-binding domain-containing protein -
  R4710_RS03890 - 734949..735452 (-) 504 WP_000800928.1 phosphatase PAP2 family protein -
  R4710_RS03895 - 735449..735811 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R4710_RS11230 rcrQ 735877..736908 (-) 1032 WP_000506425.1 ABC transporter ATP-binding protein Regulator
  R4710_RS11235 - 736915..737736 (-) 822 Protein_754 ABC transporter permease -
  R4710_RS03905 - 737753..738224 (-) 472 Protein_755 MarR family winged helix-turn-helix transcriptional regulator -
  R4710_RS03910 - 738348..739064 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4710_RS03915 ply 739945..741360 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  R4710_RS03920 - 741371..741781 (-) 411 WP_000595762.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37908.08 Da        Isoelectric Point: 4.4764

>NTDB_id=895221 R4710_RS11230 WP_000506425.1 735877..736908(-) (rcrQ) [Streptococcus pneumoniae strain 16P2012-2]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGSTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=895221 R4710_RS11230 WP_000506425.1 735877..736908(-) (rcrQ) [Streptococcus pneumoniae strain 16P2012-2]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGTCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCACGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382