Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R4535_RS12100 Genome accession   NZ_CP137091
Coordinates   2682663..2683523 (+) Length   286 a.a.
NCBI ID   WP_076025368.1    Uniprot ID   -
Organism   Vibrio cholerae strain DL4211     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2677663..2688523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS12080 (R4535_12055) greB 2678191..2678673 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  R4535_RS12085 (R4535_12060) - 2678918..2681239 (+) 2322 WP_207807133.1 Tex family protein -
  R4535_RS12090 (R4535_12065) - 2681334..2681804 (-) 471 WP_000961393.1 hypothetical protein -
  R4535_RS12095 (R4535_12070) bioH 2681966..2682727 (-) 762 WP_162813377.1 pimeloyl-ACP methyl ester esterase BioH -
  R4535_RS12100 (R4535_12075) comF 2682663..2683523 (+) 861 WP_076025368.1 ComF family protein Machinery gene
  R4535_RS12105 (R4535_12080) nfuA 2683611..2684198 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  R4535_RS12110 (R4535_12085) nudE 2684337..2684885 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  R4535_RS12115 (R4535_12090) cysQ 2684908..2685735 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  R4535_RS12120 (R4535_12095) - 2685787..2686545 (-) 759 WP_032471732.1 type II secretion system protein N -
  R4535_RS12125 (R4535_12100) - 2686547..2687044 (-) 498 WP_000661347.1 type II secretion system protein M -
  R4535_RS12130 (R4535_12105) gspL 2687054..2688265 (-) 1212 WP_042989853.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32543.48 Da        Isoelectric Point: 8.0588

>NTDB_id=894976 R4535_RS12100 WP_076025368.1 2682663..2683523(+) (comF) [Vibrio cholerae strain DL4211]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYLDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=894976 R4535_RS12100 WP_076025368.1 2682663..2683523(+) (comF) [Vibrio cholerae strain DL4211]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCTTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGACCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTAACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388