Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AAYR29_RS10995 Genome accession   NZ_CP154918
Coordinates   2022735..2023652 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain FUA2231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2017735..2028652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS10970 (AAYR29_10970) spx 2018094..2018489 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  AAYR29_RS10975 (AAYR29_10975) yjbC 2018670..2019248 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  AAYR29_RS10980 (AAYR29_10980) yjbB 2019412..2020629 (-) 1218 WP_088467689.1 MFS transporter -
  AAYR29_RS10985 (AAYR29_10985) oppF 2020735..2021652 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  AAYR29_RS10990 (AAYR29_10990) oppD 2021654..2022730 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  AAYR29_RS10995 (AAYR29_10995) amiD 2022735..2023652 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  AAYR29_RS11000 (AAYR29_11000) oppB 2023656..2024591 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  AAYR29_RS11005 (AAYR29_11005) oppA 2024699..2026336 (-) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  AAYR29_RS11010 (AAYR29_11010) trpS 2027080..2028072 (+) 993 WP_086344582.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=894974 AAYR29_RS10995 WP_003232954.1 2022735..2023652(-) (amiD) [Bacillus subtilis strain FUA2231]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=894974 AAYR29_RS10995 WP_003232954.1 2022735..2023652(-) (amiD) [Bacillus subtilis strain FUA2231]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364