Detailed information NTG0894974

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: R4535_RS11900
• Genome accession: NZ_CP137091
• Coordinates: 2631723..2632730 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain DL4211
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2626723..2637730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4535_RS11875 (R4535_11850)	rraA	2627298..2627813 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
R4535_RS11880 (R4535_11855)	-	2627888..2628805 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
R4535_RS11885 (R4535_11860)	hslU	2628909..2630240 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
R4535_RS11890 (R4535_11865)	hslV	2630306..2630863 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
R4535_RS11895 (R4535_11870)	-	2631000..2631551 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
R4535_RS11900 (R4535_11875)	cytR	2631723..2632730 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
R4535_RS11905 (R4535_11880)	priA	2633036..2635240 (-)	2205	WP_076024920.1	primosomal protein N'	-
R4535_RS11910 (R4535_11885)	rpmE	2635495..2635713 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
R4535_RS11915 (R4535_11890)	-	2636021..2637298 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
R4535_RS11920 (R4535_11895)	metJ	2637409..2637726 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=894974 R4535_RS11900 WP_000224452.1 2631723..2632730(-) (cytR) [Vibrio cholerae strain DL4211]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=894974 R4535_RS11900 WP_000224452.1 2631723..2632730(-) (cytR) [Vibrio cholerae strain DL4211]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCTGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAGCGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904