Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AAYR29_RS09020 Genome accession   NZ_CP154918
Coordinates   1671497..1671946 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain FUA2231     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666497..1676946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS08990 (AAYR29_08990) sepM 1666576..1667601 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AAYR29_RS08995 (AAYR29_08995) ylbK 1667603..1668385 (-) 783 WP_345806375.1 patatin family protein -
  AAYR29_RS09000 (AAYR29_09000) spoVV 1668566..1669792 (+) 1227 WP_345806376.1 dipicolinic acid transporter SpoVV -
  AAYR29_RS09005 (AAYR29_09005) coaD 1669803..1670288 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAYR29_RS09010 (AAYR29_09010) rsmD 1670293..1670847 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAYR29_RS09015 (AAYR29_09015) ylbG 1671170..1671442 (-) 273 WP_015715839.1 YlbG family protein -
  AAYR29_RS09020 (AAYR29_09020) ylbF 1671497..1671946 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAYR29_RS09025 (AAYR29_09025) ylbE 1672062..1672301 (-) 240 WP_003232231.1 YlbE-like family protein -
  AAYR29_RS09030 (AAYR29_09030) ylbD 1672317..1672715 (-) 399 WP_003232233.1 YlbD family protein -
  AAYR29_RS09035 (AAYR29_09035) ylbC 1672945..1673985 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  AAYR29_RS09040 (AAYR29_09040) ylbB 1674069..1674515 (-) 447 WP_003221362.1 CBS domain-containing protein -
  AAYR29_RS09045 (AAYR29_09045) ylbA 1674655..1675017 (+) 363 WP_003232238.1 YugN family protein -
  AAYR29_RS09050 (AAYR29_09050) ctaG 1675049..1675942 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  AAYR29_RS09055 (AAYR29_09055) ctaF 1675970..1676302 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  AAYR29_RS09060 (AAYR29_09060) ctaE 1676305..1676928 (-) 624 WP_015715836.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=894959 AAYR29_RS09020 WP_003221370.1 1671497..1671946(-) (ylbF) [Bacillus subtilis strain FUA2231]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=894959 AAYR29_RS09020 WP_003221370.1 1671497..1671946(-) (ylbF) [Bacillus subtilis strain FUA2231]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1