Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   R3L04_RS13465 Genome accession   NZ_CP137075
Coordinates   2782737..2783117 (-) Length   126 a.a.
NCBI ID   WP_000836909.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2777737..2788117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS13435 (R3L04_13440) tadA 2777856..2778359 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  R3L04_RS13440 (R3L04_13445) - 2778366..2779490 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  R3L04_RS13445 (R3L04_13450) ung 2779487..2780200 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  R3L04_RS13450 (R3L04_13455) - 2780251..2780847 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  R3L04_RS13455 (R3L04_13460) gspK 2781077..2782036 (-) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  R3L04_RS13460 (R3L04_13465) xcpW 2782036..2782737 (-) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  R3L04_RS13465 (R3L04_13470) xcpV 2782737..2783117 (-) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  R3L04_RS13470 (R3L04_13475) - 2783107..2783661 (-) 555 WP_000841372.1 type II secretion system protein -
  R3L04_RS13475 (R3L04_13480) - 2783671..2784279 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  R3L04_RS13480 (R3L04_13485) - 2784317..2785090 (-) 774 WP_000497301.1 TatD family hydrolase -
  R3L04_RS13485 (R3L04_13490) - 2785108..2785449 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  R3L04_RS13490 (R3L04_13495) - 2785461..2786441 (-) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  R3L04_RS13495 (R3L04_13500) kdsB 2786453..2787214 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13991.24 Da        Isoelectric Point: 9.8004

>NTDB_id=894862 R3L04_RS13465 WP_000836909.1 2782737..2783117(-) (xcpV) [Acinetobacter baumannii strain SNUBHAB0006]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=894862 R3L04_RS13465 WP_000836909.1 2782737..2783117(-) (xcpV) [Acinetobacter baumannii strain SNUBHAB0006]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992