Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R3L04_RS07425 Genome accession   NZ_CP137075
Coordinates   1536742..1537152 (+) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1531742..1542152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS07410 (R3L04_07420) - 1532731..1535037 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  R3L04_RS07415 (R3L04_07425) - 1535082..1535855 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  R3L04_RS07420 (R3L04_07430) mazG 1535967..1536773 (+) 807 WP_031958020.1 nucleoside triphosphate pyrophosphohydrolase -
  R3L04_RS07425 (R3L04_07435) comEA 1536742..1537152 (+) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  R3L04_RS07430 (R3L04_07440) pcnB 1537277..1538740 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  R3L04_RS07435 (R3L04_07445) folK 1538737..1539219 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  R3L04_RS07440 (R3L04_07450) panB 1539265..1540074 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  R3L04_RS07445 (R3L04_07455) panC 1540078..1540926 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  R3L04_RS07450 (R3L04_07460) rapZ 1540949..1541800 (+) 852 WP_000821671.1 RNase adapter RapZ -
  R3L04_RS07455 (R3L04_07465) - 1541797..1542066 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=894856 R3L04_RS07425 WP_002036702.1 1536742..1537152(+) (comEA) [Acinetobacter baumannii strain SNUBHAB0006]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=894856 R3L04_RS07425 WP_002036702.1 1536742..1537152(+) (comEA) [Acinetobacter baumannii strain SNUBHAB0006]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375