Detailed information NTG0894638

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: AAVC70_RS04045
• Genome accession: NZ_CP154898
• Coordinates: 594704..595972 (+)
• Length: 422 a.a.
• NCBI ID: WP_013353023.1
• Uniprot ID: A0A9P1NII9
• Organism: Bacillus amyloliquefaciens strain Fad 97
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 589704..600972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVC70_RS04025 (AAVC70_04025)	-	591075..591725 (-)	651	WP_013353019.1	tetratricopeptide repeat protein	-
AAVC70_RS04030 (AAVC70_04030)	mnmA	591783..592898 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
AAVC70_RS04035 (AAVC70_04035)	-	592935..594074 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
AAVC70_RS04040 (AAVC70_04040)	cymR	594093..594509 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
AAVC70_RS04045 (AAVC70_04045)	rarA	594704..595972 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene
AAVC70_RS04050 (AAVC70_04050)	-	596090..596854 (-)	765	WP_013353024.1	tRNA threonylcarbamoyladenosine dehydratase	-
AAVC70_RS04060 (AAVC70_04060)	aspS	597181..598959 (-)	1779	WP_013353025.1	aspartate--tRNA ligase	-
AAVC70_RS04065 (AAVC70_04065)	hisS	598974..600248 (-)	1275	WP_013353026.1	histidine--tRNA ligase	-
AAVC70_RS04070 (AAVC70_04070)	-	600628..600798 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46685.56 Da
• Isoelectric Point: 8.2451

>NTDB_id=894638 AAVC70_RS04045 WP_013353023.1 594704..595972(+) (rarA) [Bacillus amyloliquefaciens strain Fad 97]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=894638 AAVC70_RS04045 WP_013353023.1 594704..595972(+) (rarA) [Bacillus amyloliquefaciens strain Fad 97]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGAAGCGATGGATCATTTCGCGCAAGG
GTGTGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTTCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTAATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAACAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTGAAACAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A0A9P1NII9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905