Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AAFU62_RS07835 Genome accession   NZ_CP154891
Coordinates   1606447..1607715 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601447..1612715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS07810 (AAFU62_07810) - 1601614..1602363 (-) 750 WP_136266962.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AAFU62_RS07815 (AAFU62_07815) prmA 1602363..1603316 (-) 954 WP_136021537.1 50S ribosomal protein L11 methyltransferase -
  AAFU62_RS07820 (AAFU62_07820) - 1603387..1603857 (-) 471 WP_136268335.1 DUF3013 family protein -
  AAFU62_RS07825 (AAFU62_07825) pabB 1604058..1605815 (+) 1758 WP_136269044.1 aminodeoxychorismate synthase component I -
  AAFU62_RS07830 (AAFU62_07830) - 1605848..1606414 (+) 567 WP_010922701.1 aminodeoxychorismate/anthranilate synthase component II -
  AAFU62_RS07835 (AAFU62_07835) rarA 1606447..1607715 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  AAFU62_RS07850 (AAFU62_07850) - 1608214..1608654 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  AAFU62_RS07855 (AAFU62_07855) - 1608709..1609215 (+) 507 WP_011529046.1 DNA topology modulation protein -
  AAFU62_RS07860 (AAFU62_07860) smeZ 1609464..1610165 (+) 702 WP_136268337.1 streptococcal mitogenic exotoxin SmeZ -
  AAFU62_RS07865 (AAFU62_07865) - 1610895..1612523 (+) 1629 WP_136083640.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=894319 AAFU62_RS07835 WP_011285735.1 1606447..1607715(+) (rarA) [Streptococcus pyogenes strain 318231]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=894319 AAFU62_RS07835 WP_011285735.1 1606447..1607715(+) (rarA) [Streptococcus pyogenes strain 318231]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACTGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGTC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592