Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU34_RS12535 Genome accession   NZ_AP024911
Coordinates   2696182..2696901 (+) Length   239 a.a.
NCBI ID   WP_241967693.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2691182..2701901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS12520 - 2692322..2694524 (+) 2203 Protein_2392 Tex family protein -
  OCU34_RS12525 - 2694726..2695199 (-) 474 WP_123017093.1 ATP-dependent Lon protease -
  OCU34_RS12530 bioH 2695335..2696105 (-) 771 WP_123017094.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU34_RS12535 comF 2696182..2696901 (+) 720 WP_241967693.1 ComF family protein Machinery gene
  OCU34_RS12540 nfuA 2696996..2697583 (+) 588 WP_164711905.1 Fe-S biogenesis protein NfuA -
  OCU34_RS12545 nudE 2697677..2698234 (+) 558 WP_123017096.1 ADP compounds hydrolase NudE -
  OCU34_RS12550 cysQ 2698263..2699090 (+) 828 WP_123017097.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU34_RS12555 - 2699156..2699914 (-) 759 WP_123017098.1 type II secretion system protein N -
  OCU34_RS12560 - 2699916..2700425 (-) 510 WP_123017099.1 type II secretion system protein M -
  OCU34_RS12565 gspL 2700435..2701649 (-) 1215 WP_123017100.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27481.08 Da        Isoelectric Point: 8.7213

>NTDB_id=89414 OCU34_RS12535 WP_241967693.1 2696182..2696901(+) (comF) [Vibrio zhugei strain KCTC 62784]
MMIMLANWWQKNIKRQIPQCCDLCGLSLDSDSIMTLCAACQLALTPQPRCQRCGLTTLSPMRECGRCLKQPPPWHALYCI
GDYRYPLDHYIHQLKYQRQFWLAQPLAQQLATTITEPAPLLCAVPMHWRRYLWRGFNQSDQLAQQLASELHVQYWPSLFH
RRRATIPQKGLHKSQRRHNLAGAFHFTTPIHTLGSHVAIVDDVVTTGSTLKPLCHLLTAIGVTQIDIYCLCRTPEPREA

Nucleotide


Download         Length: 720 bp        

>NTDB_id=89414 OCU34_RS12535 WP_241967693.1 2696182..2696901(+) (comF) [Vibrio zhugei strain KCTC 62784]
ATGATGATTATGTTAGCGAATTGGTGGCAAAAAAACATTAAAAGACAAATACCGCAATGTTGTGACCTGTGCGGATTATC
GCTGGATAGTGATAGCATCATGACACTGTGTGCGGCCTGTCAGTTAGCGCTCACTCCGCAGCCTCGTTGTCAACGCTGCG
GATTAACAACCCTATCGCCGATGCGTGAATGTGGTCGTTGCCTTAAACAGCCTCCCCCTTGGCACGCCCTGTATTGCATC
GGTGACTATCGCTATCCGCTCGATCACTACATCCATCAGCTCAAATATCAGCGCCAATTTTGGCTCGCCCAACCGTTAGC
CCAGCAATTAGCCACCACCATCACTGAGCCGGCTCCGCTATTGTGTGCCGTCCCCATGCACTGGCGACGCTATCTATGGC
GCGGTTTCAACCAAAGTGATCAATTAGCACAACAACTTGCGTCTGAATTACACGTCCAATACTGGCCGTCGTTATTTCAT
CGCCGACGAGCCACGATTCCGCAAAAGGGTCTCCATAAAAGCCAACGCCGACACAATTTGGCGGGGGCGTTTCACTTTAC
CACGCCCATTCATACGCTAGGCTCTCATGTTGCGATAGTCGACGATGTCGTGACGACGGGGAGCACTTTAAAACCGTTGT
GTCACCTGCTCACTGCCATTGGAGTGACCCAGATTGATATCTATTGCTTATGCAGGACGCCTGAGCCCCGTGAAGCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

57.143

99.582

0.569
  comF Vibrio campbellii strain DS40M4

45

100

0.452

Multiple sequence alignment