Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   R0Q54_RS01785 Genome accession   NZ_CP136992
Coordinates   304265..304600 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain J46     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 299265..309600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS01765 (R0Q54_01765) gcvT 299857..300945 (-) 1089 WP_069964209.1 glycine cleavage system aminomethyltransferase GcvT -
  R0Q54_RS01770 (R0Q54_01770) hepAA 301387..303060 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  R0Q54_RS01775 (R0Q54_01775) yqhG 303081..303875 (+) 795 WP_014480249.1 YqhG family protein -
  R0Q54_RS01780 (R0Q54_01780) sinI 304058..304231 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  R0Q54_RS01785 (R0Q54_01785) sinR 304265..304600 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  R0Q54_RS01790 (R0Q54_01790) tasA 304693..305478 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  R0Q54_RS01795 (R0Q54_01795) sipW 305542..306114 (-) 573 WP_003230181.1 signal peptidase I SipW -
  R0Q54_RS01800 (R0Q54_01800) tapA 306098..306859 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  R0Q54_RS01805 (R0Q54_01805) yqzG 307131..307457 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  R0Q54_RS01810 (R0Q54_01810) spoIITA 307499..307678 (-) 180 WP_014480252.1 YqzE family protein -
  R0Q54_RS01815 (R0Q54_01815) comGG 307749..308123 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  R0Q54_RS01820 (R0Q54_01820) comGF 308124..308507 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  R0Q54_RS01825 (R0Q54_01825) comGE 308533..308880 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  R0Q54_RS01830 (R0Q54_01830) comGD 308864..309295 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  R0Q54_RS01835 (R0Q54_01835) comGC 309285..309581 (-) 297 WP_069964211.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=894012 R0Q54_RS01785 WP_003226345.1 304265..304600(+) (sinR) [Bacillus subtilis strain J46]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=894012 R0Q54_RS01785 WP_003226345.1 304265..304600(+) (sinR) [Bacillus subtilis strain J46]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1