Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU60_RS16330 Genome accession   NZ_AP024907
Coordinates   3663966..3664667 (+) Length   233 a.a.
NCBI ID   WP_074372965.1    Uniprot ID   -
Organism   Vibrio spartinae strain CECT 9026     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3658966..3669667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS16310 greB 3659540..3660019 (+) 480 WP_074372969.1 transcription elongation factor GreB -
  OCU60_RS16315 - 3660044..3662353 (+) 2310 WP_074372968.1 Tex family protein -
  OCU60_RS16320 - 3662484..3662960 (-) 477 WP_074372967.1 ATP-dependent Lon protease -
  OCU60_RS16325 bioH 3663111..3663875 (-) 765 WP_074372966.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU60_RS16330 comF 3663966..3664667 (+) 702 WP_074372965.1 phosphoribosyltransferase family protein Machinery gene
  OCU60_RS16335 nfuA 3664751..3665338 (+) 588 WP_074372964.1 Fe-S biogenesis protein NfuA -
  OCU60_RS16340 nudE 3665503..3666081 (+) 579 WP_074372963.1 ADP compounds hydrolase NudE -
  OCU60_RS16345 cysQ 3666078..3666899 (+) 822 WP_074372962.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU60_RS16350 - 3666969..3667739 (-) 771 WP_139302110.1 type II secretion system protein N -
  OCU60_RS16355 - 3667745..3668236 (-) 492 WP_074372960.1 type II secretion system protein M -
  OCU60_RS16360 gspL 3668246..3669457 (-) 1212 WP_074372959.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26830.32 Da        Isoelectric Point: 8.7392

>NTDB_id=89385 OCU60_RS16330 WP_074372965.1 3663966..3664667(+) (comF) [Vibrio spartinae strain CECT 9026]
MLLQRIQHAVRHRTPRLCALCELPLTAWDHHWCASCLTYFQSTPRCTRCGLSMPFPTDRCGTCLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWLIPSLAALLAQVIPSPAPLLLPVPLHWRRYLYRGFNQSDLLAHHLSQALSVSYQTKLLQRIRS
TPPQEGLHKNEREQNLRKAFMLRNRPSAKHIAIVDDVVTTGSTISQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=89385 OCU60_RS16330 WP_074372965.1 3663966..3664667(+) (comF) [Vibrio spartinae strain CECT 9026]
ATGTTATTGCAACGCATTCAACACGCTGTCCGTCACCGTACCCCCCGATTATGCGCGCTCTGTGAGTTACCATTAACTGC
TTGGGACCATCACTGGTGTGCCAGCTGCCTGACATACTTTCAATCAACACCCCGTTGTACACGATGCGGTTTATCGATGC
CATTCCCAACGGACCGATGCGGCACTTGCCTTCAGTCCCCGCCACTGTGGAACGCGCTCTATTGCCTTGGTGATTATGCC
TACCCATTGGCACCCATGATTCACCAAATCAAATACGGACGCCAGTTCTGGCTTATACCGTCTCTCGCTGCGCTTTTGGC
GCAGGTCATCCCTTCCCCTGCACCATTGCTACTGCCGGTTCCCCTACACTGGCGACGTTATCTTTATCGCGGGTTCAATC
AGAGTGACTTACTGGCACACCATCTCAGTCAAGCGCTGTCAGTGAGCTATCAAACCAAACTGTTACAACGAATTCGTTCA
ACGCCACCGCAAGAAGGTCTGCATAAAAATGAAAGAGAACAGAATCTGAGAAAAGCGTTTATGTTACGCAACCGCCCCTC
AGCCAAACATATTGCGATCGTTGATGATGTGGTGACAACAGGTAGTACCATCAGTCAATTATGCCAATTATTACTTGAAG
TCGGCGTCGAATACATTGATATTTATTGCTTATGCAGAACTCCTGAATATCACAACCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.338

91.416

0.515
  comF Vibrio campbellii strain DS40M4

48.402

93.991

0.455

Multiple sequence alignment