Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU42_RS14085 Genome accession   NZ_AP024905
Coordinates   3199741..3200442 (+) Length   233 a.a.
NCBI ID   WP_077336823.1    Uniprot ID   A0A1R4LPJ9
Organism   Vibrio ruber strain LMG 23124     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3194741..3205442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS14065 greB 3195318..3195797 (+) 480 WP_077336821.1 transcription elongation factor GreB -
  OCU42_RS14070 - 3195822..3198134 (+) 2313 WP_077336822.1 Tex family protein -
  OCU42_RS14075 - 3198258..3198734 (-) 477 WP_077336852.1 ATP-dependent Lon protease -
  OCU42_RS14080 bioH 3198886..3199650 (-) 765 WP_077336853.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU42_RS14085 comF 3199741..3200442 (+) 702 WP_077336823.1 phosphoribosyltransferase family protein Machinery gene
  OCU42_RS14090 nfuA 3200526..3201113 (+) 588 WP_077336824.1 Fe-S biogenesis protein NfuA -
  OCU42_RS14095 nudE 3201279..3201857 (+) 579 WP_077336825.1 ADP compounds hydrolase NudE -
  OCU42_RS14100 cysQ 3201854..3202675 (+) 822 WP_077336826.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU42_RS14105 - 3202751..3203521 (-) 771 WP_139344106.1 type II secretion system protein N -
  OCU42_RS14110 gspM 3203527..3204018 (-) 492 WP_139344107.1 type II secretion system protein GspM -
  OCU42_RS14115 gspL 3204028..3205239 (-) 1212 WP_159440475.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26643.08 Da        Isoelectric Point: 8.6765

>NTDB_id=89355 OCU42_RS14085 WP_077336823.1 3199741..3200442(+) (comF) [Vibrio ruber strain LMG 23124]
MLLHALQHAFRRHIPRLCALCELPLTAWEHHWCTSCLTCFQSTSRCTRCGLAMPFPTSRCGACLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWLIPPLATLLAQVIPSPAPVLLSVPLHWRRYLYRGFNQSDLLAHHLSRALAVSSQTRLLQRIRP
TPPQEGLHKHEREQNLRRAFTLRSRPSATHVAIVDDVVTTGSTVSQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=89355 OCU42_RS14085 WP_077336823.1 3199741..3200442(+) (comF) [Vibrio ruber strain LMG 23124]
ATGTTATTACACGCTCTTCAACACGCTTTTCGTCGCCATATTCCCCGATTATGCGCACTCTGTGAGCTGCCGTTAACCGC
ATGGGAACATCACTGGTGTACCAGCTGCCTGACCTGTTTTCAATCAACATCCCGTTGTACTCGCTGTGGTCTGGCGATGC
CATTTCCCACCAGCCGGTGCGGGGCTTGTCTTCAGTCTCCGCCGCTTTGGAATGCTCTCTATTGTCTCGGAGATTATGCC
TATCCGTTAGCACCGATGATCCATCAAATTAAATACGGGCGGCAGTTCTGGCTCATCCCGCCCCTTGCAACACTTTTGGC
ACAAGTCATTCCCTCCCCTGCACCAGTCTTGCTCTCAGTTCCCCTTCACTGGCGACGTTATCTTTACCGCGGGTTTAACC
AGAGTGATTTACTGGCTCATCATCTCAGCCGGGCATTAGCAGTCTCCAGTCAGACCAGGCTTTTACAGCGAATTCGTCCG
ACACCGCCGCAAGAAGGGCTACATAAACATGAAAGAGAACAGAACCTGAGAAGAGCGTTTACGTTACGTAGCCGCCCCTC
AGCCACACATGTAGCAATCGTTGACGATGTTGTGACAACCGGCAGTACCGTCAGTCAATTATGCCAATTATTGCTTGAAG
TTGGCGTCGAATACATCGATATTTATTGCTTATGCAGAACTCCTGAATATCACAATCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LPJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

53.043

98.712

0.524
  comF Vibrio campbellii strain DS40M4

48.305

100

0.489

Multiple sequence alignment