Detailed information NTG0893530

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RJD36_RS01675
• Genome accession: NZ_CP136943
• Coordinates: 300489..301418 (+)
• Length: 309 a.a.
• NCBI ID: WP_003063313.1
• Uniprot ID: A0AAW6YLS0
• Organism: Streptococcus pasteurianus strain WUSP082
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	301541..302878	300489..301418	flank	123

Gene organization within MGE regions

Location: 300489..302878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD36_RS01675 (RJD36_01675)	amiF	300489..301418 (+)	930	WP_003063313.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 309 a.a.
• Molecular weight: 35065.89 Da
• Isoelectric Point: 5.8016

>NTDB_id=893530 RJD36_RS01675 WP_003063313.1 300489..301418(+) (amiF) [Streptococcus pasteurianus strain WUSP082]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDRKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSVELDGQPREMREITPGHFVLCTEAEAEAYKKEL

Nucleotide

• Length: 930 bp

>NTDB_id=893530 RJD36_RS01675 WP_003063313.1 300489..301418(+) (amiF) [Streptococcus pasteurianus strain WUSP082]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTACGATATTAATAAAGGTGAAATTGATTTTGATGGTGAAACCATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCGAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGCCAA
CGTATTGGTATCGCTCGTGCTCTTGCCGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGATGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGTTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGAGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTATAATCATCCAATTCACCCATATACTAAGAGCTTGTTGACTGCAATTCCAGAACCAGACCCAGAGTCTGAAAGAAA
TCGTATCCATGAAGAGTACGATCCAAGTGTAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGACACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-272)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.706	0.54
amiF	Streptococcus salivarius strain HSISS4	54.754	98.706	0.54
amiF	Streptococcus thermophilus LMG 18311	54.426	98.706	0.537