Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AAIS09_RS08170 Genome accession   NZ_CP154595
Coordinates   1633415..1634686 (+) Length   423 a.a.
NCBI ID   WP_061813615.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain serotype 4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1628415..1639686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIS09_RS08135 (AAIS09_08120) - 1629481..1629909 (-) 429 WP_000418161.1 NUDIX hydrolase -
  AAIS09_RS08140 (AAIS09_08125) - 1629890..1630978 (-) 1089 WP_000719722.1 site-2 protease family protein -
  AAIS09_RS08145 (AAIS09_08130) - 1630997..1631467 (-) 471 WP_000257089.1 DUF3013 family protein -
  AAIS09_RS08150 (AAIS09_08135) - 1631758..1632210 (-) 453 Protein_1613 type II toxin-antitoxin system HicB family antitoxin -
  AAIS09_RS08155 (AAIS09_08140) - 1632247..1632426 (-) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  AAIS09_RS08160 (AAIS09_08145) - 1632563..1632751 (-) 189 WP_001862821.1 hypothetical protein -
  AAIS09_RS08165 (AAIS09_08150) - 1632906..1633145 (-) 240 WP_000818078.1 hypothetical protein -
  AAIS09_RS08170 (AAIS09_08155) rarA 1633415..1634686 (+) 1272 WP_061813615.1 replication-associated recombination protein A Machinery gene
  AAIS09_RS08180 (AAIS09_08165) - 1635231..1636550 (-) 1320 WP_061813616.1 glycoside hydrolase family 32 protein -
  AAIS09_RS08185 (AAIS09_08170) - 1636560..1637405 (-) 846 WP_000819519.1 carbohydrate ABC transporter permease -
  AAIS09_RS08190 (AAIS09_08175) - 1637407..1638309 (-) 903 WP_000032533.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46941.46 Da        Isoelectric Point: 6.2424

>NTDB_id=893490 AAIS09_RS08170 WP_061813615.1 1633415..1634686(+) (rarA) [Streptococcus pneumoniae strain serotype 4]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSSSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=893490 AAIS09_RS08170 WP_061813615.1 1633415..1634686(+) (rarA) [Streptococcus pneumoniae strain serotype 4]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATACGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAGCTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567