Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R2R35_RS18255 Genome accession   NZ_CP136910
Coordinates   4402262..4404124 (+) Length   620 a.a.
NCBI ID   WP_331670156.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4397262..4409124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2R35_RS18235 (R2R35_18235) - 4398356..4398916 (-) 561 WP_317731262.1 hypothetical protein -
  R2R35_RS18240 (R2R35_18240) - 4398913..4399113 (-) 201 WP_317731263.1 helix-turn-helix transcriptional regulator -
  R2R35_RS18245 (R2R35_18245) - 4399476..4399991 (+) 516 WP_317731264.1 MarR family transcriptional regulator -
  R2R35_RS18250 (R2R35_18250) - 4400029..4402269 (+) 2241 WP_317731265.1 ABC transporter ATP-binding protein -
  R2R35_RS18255 (R2R35_18255) rcrQ 4402262..4404124 (+) 1863 WP_331670156.1 ABC transporter ATP-binding protein Regulator
  R2R35_RS18260 (R2R35_18260) - 4404345..4404503 (+) 159 WP_317731266.1 hypothetical protein -
  R2R35_RS18265 (R2R35_18265) - 4404588..4405358 (-) 771 WP_317731267.1 MerR family transcriptional regulator -
  R2R35_RS18270 (R2R35_18270) - 4405886..4407220 (+) 1335 WP_317731268.1 MATE family efflux transporter -
  R2R35_RS18275 (R2R35_18275) - 4407429..4408952 (+) 1524 WP_317731269.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 68638.23 Da        Isoelectric Point: 8.7032

>NTDB_id=893415 R2R35_RS18255 WP_331670156.1 4402262..4404124(+) (rcrQ) [Anaerocolumna sp. AGMB13020]
MSDERNKQAARPPRGGRGPMGGGPFGGPVEKPKDFKGSVSKLVKYISVYKISIILAMLFAAGSAVFFIVGPKRLGNITTD
IFTGYSAKLRGTGGIDFTKIGKALIVLLILYIASSVFNFVQGYIMSGVTQKVTYRLRTEISTKINRMPMNYFETKTHGEV
LSRVTNDVDTLSQSLNQSITTVITAITQIIGITIMMITISGRMTIVAVLTLPVSSLLIAFIMKKSQKYFKSQQEYLGHVN
GQVEEVYSGHNIVKAFNGEKQVIEEFEKSNSTLYGSAWKSQFLSGMMMPIMGFVGNIGYVAVAILGGYLTIKKTIEVGDI
QSFIQYVRSFNQPISQIAQISTQLQQTAAAAERVFEFLEEEEEDQTVPNPVNPEIVESRVEFKNVKFGYNPDKIVINNFS
AEIEKGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGEILIDGHNIKDFNRGELRKMFGMVLQDTWLFNGSIMENIRYGKED
ATDEEVIAAAKAAHAHHFISTLPDGYQMVLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMD
NLMKGRTSFIIAHRLSTIKDADLILVMKDGDIVEQGSHEELLKKQGFYAGLYNSQFEETA

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=893415 R2R35_RS18255 WP_331670156.1 4402262..4404124(+) (rcrQ) [Anaerocolumna sp. AGMB13020]
ATGAGTGATGAGAGAAATAAACAGGCAGCACGTCCGCCCAGAGGCGGCAGAGGTCCTATGGGCGGAGGTCCTTTTGGCGG
ACCGGTTGAGAAACCCAAGGATTTTAAAGGCTCCGTATCAAAGCTGGTAAAATATATATCTGTTTATAAAATAAGCATTA
TACTTGCAATGCTGTTTGCAGCGGGCAGTGCGGTATTCTTTATCGTAGGACCGAAGCGTCTGGGTAATATCACTACAGAT
ATTTTTACAGGTTATTCAGCAAAGCTTCGGGGAACCGGCGGAATTGATTTTACGAAGATAGGCAAAGCACTTATTGTATT
ACTTATATTGTATATTGCAAGTTCAGTATTTAACTTTGTCCAGGGATATATCATGTCAGGGGTAACCCAGAAGGTCACCT
ACAGGCTGCGAACTGAAATATCAACCAAGATAAACCGCATGCCAATGAACTACTTTGAGACCAAGACCCATGGTGAAGTG
TTATCCAGAGTAACAAATGATGTCGATACCTTAAGCCAGAGCTTAAATCAGAGTATTACTACGGTAATTACCGCAATAAC
CCAAATAATTGGTATTACAATTATGATGATAACCATCAGCGGCAGAATGACAATTGTTGCTGTACTTACACTGCCGGTTT
CTTCACTGCTGATAGCTTTTATCATGAAGAAATCTCAGAAGTACTTTAAGTCACAGCAGGAATATCTGGGTCATGTAAAT
GGTCAGGTAGAAGAAGTGTATTCCGGACACAACATTGTTAAGGCTTTTAACGGTGAGAAGCAGGTTATTGAAGAATTTGA
AAAGTCCAACAGCACTTTATACGGTTCTGCCTGGAAGTCTCAGTTCTTATCCGGTATGATGATGCCTATTATGGGCTTTG
TCGGAAATATCGGTTATGTAGCCGTTGCGATCCTGGGTGGTTATCTTACGATCAAGAAAACCATCGAAGTCGGTGATATC
CAGTCCTTTATTCAGTATGTAAGAAGCTTTAACCAGCCTATTTCCCAGATTGCCCAGATCTCCACGCAGCTACAGCAGAC
AGCGGCCGCAGCGGAAAGAGTATTTGAGTTCTTGGAAGAAGAGGAAGAAGACCAGACCGTTCCTAATCCCGTTAATCCTG
AAATTGTTGAGAGCAGAGTAGAATTCAAGAATGTTAAATTCGGTTATAACCCTGACAAGATCGTTATCAATAATTTCTCA
GCTGAAATTGAAAAAGGACAGAAGATTGCAATTGTAGGTCCTACCGGTGCAGGTAAGACTACGATGGTCAAACTGCTAAT
GCGTTTCTATGATGTCAATTCCGGTGAGATCCTGATTGACGGTCACAACATTAAAGATTTCAACCGCGGAGAACTGCGTA
AAATGTTTGGTATGGTATTGCAGGATACCTGGCTCTTTAACGGAAGCATAATGGAGAATATCCGTTACGGTAAAGAAGAT
GCAACGGATGAAGAGGTTATAGCAGCTGCCAAAGCGGCACATGCCCATCATTTTATATCAACCCTTCCCGATGGCTATCA
GATGGTATTAAATGAAGAAGCCAGCAATGTCTCCCAGGGGCAGAAGCAACTCTTGACCATAGCAAGAGCTATCCTGGCAG
ATCCTAAGATCCTGATTCTGGATGAAGCTACAAGTTCTGTCGACACCAGAACCGAAGTCAGAATCCAGAAGGCCATGGAT
AACCTGATGAAAGGCAGAACCAGCTTTATCATTGCCCACAGACTGTCAACCATAAAAGATGCAGACCTTATCCTTGTTAT
GAAGGACGGAGATATTGTAGAACAGGGCAGCCATGAAGAACTGTTAAAGAAGCAGGGCTTCTATGCAGGACTTTATAATT
CACAGTTTGAAGAGACTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(397-545)

ABC transporter transmembrane region (ABC_membrane)

(53-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.659

94.032

0.495