Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R1T29_RS15185 Genome accession   NZ_CP136903
Coordinates   3271752..3272477 (+) Length   241 a.a.
NCBI ID   WP_203504516.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3266752..3277477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS15170 (R1T29_15170) - 3267855..3270176 (+) 2322 WP_025588023.1 Tex family protein -
  R1T29_RS15175 (R1T29_15175) - 3270312..3270776 (-) 465 WP_193260434.1 ATP-dependent Lon protease -
  R1T29_RS15180 (R1T29_15180) bioH 3270900..3271667 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  R1T29_RS15185 (R1T29_15185) comF 3271752..3272477 (+) 726 WP_203504516.1 ComF family protein Machinery gene
  R1T29_RS15190 (R1T29_15190) nfuA 3272575..3273159 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  R1T29_RS15195 (R1T29_15195) nudE 3273380..3273949 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  R1T29_RS15200 (R1T29_15200) cysQ 3273991..3274818 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  R1T29_RS15205 (R1T29_15205) - 3275104..3275865 (-) 762 WP_025535418.1 type II secretion system protein N -
  R1T29_RS15210 (R1T29_15210) - 3275867..3276358 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27683.82 Da        Isoelectric Point: 8.9986

>NTDB_id=893310 R1T29_RS15185 WP_203504516.1 3271752..3272477(+) (comF) [Vibrio parahaemolyticus strain X1]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=893310 R1T29_RS15185 WP_203504516.1 3271752..3272477(+) (comF) [Vibrio parahaemolyticus strain X1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTAGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCATGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATATTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477