Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV37_RS14110 Genome accession   NZ_AP024903
Coordinates   3251206..3251907 (+) Length   233 a.a.
NCBI ID   WP_038185931.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3246206..3256907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS14090 greB 3246786..3247265 (+) 480 WP_038185935.1 transcription elongation factor GreB -
  OCV37_RS14095 - 3247290..3249599 (+) 2310 WP_038185933.1 Tex family protein -
  OCV37_RS14100 - 3249723..3250199 (-) 477 WP_038186077.1 hypothetical protein -
  OCV37_RS14105 bioH 3250351..3251142 (-) 792 WP_051680905.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV37_RS14110 comF 3251206..3251907 (+) 702 WP_038185931.1 amidophosphoribosyltransferase Machinery gene
  OCV37_RS14115 nfuA 3251991..3252578 (+) 588 WP_038185929.1 Fe-S biogenesis protein NfuA -
  OCV37_RS14120 nudE 3252745..3253323 (+) 579 WP_038185927.1 ADP compounds hydrolase NudE -
  OCV37_RS14125 cysQ 3253320..3254141 (+) 822 WP_038185925.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV37_RS14130 - 3254186..3254950 (-) 765 WP_157635100.1 type II secretion system protein N -
  OCV37_RS14135 gspM 3254956..3255450 (-) 495 WP_038185920.1 type II secretion system protein GspM -
  OCV37_RS14140 gspL 3255460..3256671 (-) 1212 WP_038185916.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26969.67 Da        Isoelectric Point: 9.3166

>NTDB_id=89323 OCV37_RS14110 WP_038185931.1 3251206..3251907(+) (comF) [Vibrio rhizosphaerae strain LMG 23790]
MRLQRIQQTFRRRLPQLCALCELPLTAGEHHWCATCLAHFQPTPRCTRCGLSMPFSTSQCGKCLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWLMPPLARLLAQVIPSPAPLLLPVPLHWRRYLYRGFNQSDLLAHHLSQTLAVTYQSKLLQRVRA
TPPQEGLHKRERERNLRKAFMLRERPTAKHIAIIDDVVTTGSTISQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=89323 OCV37_RS14110 WP_038185931.1 3251206..3251907(+) (comF) [Vibrio rhizosphaerae strain LMG 23790]
ATGCGATTGCAACGCATTCAACAGACTTTCCGTCGCCGTCTCCCTCAATTATGTGCACTCTGTGAGCTACCATTAACCGC
CGGAGAACACCACTGGTGTGCCACCTGTCTGGCACACTTTCAACCCACGCCCCGTTGTACACGATGCGGCTTGTCGATGC
CATTTTCAACCAGCCAATGCGGGAAGTGCCTTCAGTCTCCGCCGCTTTGGAACGCCCTTTATTGTCTTGGCGATTATGCC
TATCCGCTGGCACCGATGATCCATCAAATAAAATATGGGCGACAGTTCTGGCTCATGCCGCCTCTCGCGAGACTTTTGGC
GCAAGTTATACCTTCTCCGGCCCCGCTATTACTGCCGGTTCCGCTGCACTGGCGACGTTACCTTTATCGCGGATTTAACC
AGAGTGACTTACTGGCGCATCATCTCAGTCAGACACTGGCCGTCACCTATCAAAGCAAACTGTTGCAACGGGTTCGTGCA
ACACCACCGCAAGAAGGACTCCATAAACGAGAAAGAGAACGGAATCTGAGAAAAGCGTTTATGTTGCGCGAGCGCCCCAC
GGCAAAACACATTGCGATCATTGATGACGTCGTGACAACGGGGAGTACCATCAGTCAATTATGCCAACTATTGCTTGAAG
TTGGCGTCGAATACATTGATATTTATTGCTTATGCAGAACTCCTGAATATCACAATCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.338

91.416

0.515
  comF Vibrio campbellii strain DS40M4

48.261

98.712

0.476

Multiple sequence alignment