Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R1Y14_RS00175 Genome accession   NZ_CP136899
Coordinates   19709..20740 (-) Length   343 a.a.
NCBI ID   WP_000346791.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 14709..25740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS00125 (R1Y14_00125) - 14855..15616 (-) 762 WP_001107767.1 SDR family NAD(P)-dependent oxidoreductase -
  R1Y14_RS00130 (R1Y14_00130) ytpR 15649..16275 (-) 627 WP_000578318.1 YtpR family tRNA-binding protein -
  R1Y14_RS00135 (R1Y14_00135) - 16291..16608 (-) 318 WP_000615769.1 thioredoxin family protein -
  R1Y14_RS00140 (R1Y14_00140) - 16605..16904 (-) 300 WP_001013976.1 DUF4651 domain-containing protein -
  R1Y14_RS00145 (R1Y14_00145) - 17102..17182 (-) 81 WP_223200463.1 hypothetical protein -
  R1Y14_RS00150 (R1Y14_00150) - 17189..17380 (-) 192 WP_000291826.1 cell wall-binding protein -
  R1Y14_RS00155 (R1Y14_00155) - 17541..18215 (-) 675 WP_000725745.1 LiaF transmembrane domain-containing protein -
  R1Y14_RS00160 (R1Y14_00160) - 18221..18667 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R1Y14_RS00165 (R1Y14_00165) - 18769..19284 (-) 516 WP_000800937.1 phosphatase PAP2 family protein -
  R1Y14_RS00170 (R1Y14_00170) - 19281..19643 (-) 363 WP_000078808.1 DUF2200 domain-containing protein -
  R1Y14_RS00175 (R1Y14_00175) rcrQ 19709..20740 (-) 1032 WP_000346791.1 ABC transporter ATP-binding protein Regulator
  R1Y14_RS00180 (R1Y14_00180) rcrP 20747..21568 (-) 822 WP_317669813.1 ABC transporter permease Regulator
  R1Y14_RS00185 (R1Y14_00185) - 21585..22055 (-) 471 WP_000360533.1 MarR family winged helix-turn-helix transcriptional regulator -
  R1Y14_RS00190 (R1Y14_00190) - 22179..22895 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R1Y14_RS00195 (R1Y14_00195) ply 23776..25191 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  R1Y14_RS00200 (R1Y14_00200) - 25202..25612 (-) 411 WP_000595762.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37976.15 Da        Isoelectric Point: 4.3958

>NTDB_id=893197 R1Y14_RS00175 WP_000346791.1 19709..20740(-) (rcrQ) [Streptococcus pneumoniae strain ST62]
MDFLLMGALFIVLPQTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATVHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=893197 R1Y14_RS00175 WP_000346791.1 19709..20740(-) (rcrQ) [Streptococcus pneumoniae strain ST62]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCAAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGTTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATTGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.5

100

0.376