Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV11_RS15700 Genome accession   NZ_AP024895
Coordinates   3430571..3431278 (+) Length   235 a.a.
NCBI ID   WP_261893974.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3425571..3436278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS15685 - 3426677..3428998 (+) 2322 WP_261893970.1 Tex family protein -
  OCV11_RS15690 - 3429110..3429580 (-) 471 WP_261893971.1 ATP-dependent Lon protease -
  OCV11_RS15695 bioH 3429717..3430487 (-) 771 WP_261893972.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV11_RS15700 comF 3430571..3431278 (+) 708 WP_261893974.1 phosphoribosyltransferase family protein Machinery gene
  OCV11_RS15705 nfuA 3431373..3431960 (+) 588 WP_225250368.1 Fe-S biogenesis protein NfuA -
  OCV11_RS15710 nudE 3432081..3432662 (+) 582 WP_261893975.1 ADP compounds hydrolase NudE -
  OCV11_RS15715 cysQ 3432667..3433494 (+) 828 WP_261893976.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV11_RS15720 - 3433556..3434308 (-) 753 WP_261893977.1 type II secretion system protein N -
  OCV11_RS15725 - 3434310..3434819 (-) 510 WP_261893979.1 type II secretion system protein M -
  OCV11_RS15730 gspL 3434832..3436046 (-) 1215 WP_261893981.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27187.69 Da        Isoelectric Point: 9.0552

>NTDB_id=89263 OCV11_RS15700 WP_261893974.1 3430571..3431278(+) (comF) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MVSNWLQKTIRSLSPAQCHLCRLPLAATDQHYFCQACLMQFPVIPRCKRCGLVTTKPVEQCGRCLKKPPIWHSLSCIGDY
HYPLSQLTHQFKYQRAFWLAPPLSQLLTQHIGEPAPVITAVPLHWRRYLWRGFNQSDLLARQLSQQMNCEYWPFLFHRTR
ATPHQQGLSRHQRLTNLKGAFYLHSLPYPVEHVAIVDDVVTTGSTVKQLCRLLLDVGVQRVDIYCLCRTPEPTDS

Nucleotide


Download         Length: 708 bp        

>NTDB_id=89263 OCV11_RS15700 WP_261893974.1 3430571..3431278(+) (comF) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGGTATCGAATTGGCTACAAAAAACCATCCGCTCACTCTCTCCCGCGCAGTGCCATTTGTGCCGCTTGCCTTTAGCTGC
CACCGATCAACACTACTTTTGCCAAGCATGCTTAATGCAATTCCCTGTGATTCCTCGTTGCAAACGGTGTGGGCTGGTGA
CCACAAAACCGGTAGAACAATGCGGCCGCTGCCTGAAAAAGCCGCCTATCTGGCACTCATTATCCTGCATTGGTGATTAT
CACTACCCATTAAGCCAGCTTACTCACCAATTCAAATATCAGCGCGCGTTTTGGTTAGCGCCACCACTTTCTCAATTACT
CACGCAACACATTGGTGAACCTGCCCCCGTGATTACTGCGGTACCACTCCATTGGCGTCGTTATCTTTGGCGCGGTTTTA
ATCAGAGCGATCTACTTGCTCGACAATTGAGTCAACAGATGAATTGTGAATATTGGCCTTTTCTATTTCACCGCACACGA
GCCACACCACATCAACAAGGACTGTCGCGCCATCAAAGGCTCACCAACTTAAAAGGGGCTTTCTATCTGCATTCTCTCCC
TTATCCGGTTGAGCATGTTGCTATTGTTGATGATGTCGTGACCACAGGCAGCACAGTGAAACAATTGTGTCGCTTATTAC
TTGATGTTGGCGTGCAAAGAGTGGATATTTACTGCCTATGTCGCACTCCTGAACCAACCGATTCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.723

100

0.587
  comF Vibrio campbellii strain DS40M4

45.607

100

0.464

Multiple sequence alignment