Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GZ111_RS00085 Genome accession   NZ_CP152420
Coordinates   18426..19700 (-) Length   424 a.a.
NCBI ID   WP_000102726.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17-021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 13426..24700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ111_RS00060 (GZ111_000060) hisS 13987..15249 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  GZ111_RS00065 (GZ111_000065) aspS 15265..17031 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  GZ111_RS00075 (GZ111_000075) - 17364..17492 (+) 129 WP_001790559.1 hypothetical protein -
  GZ111_RS00080 (GZ111_000080) - 17492..18265 (+) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  GZ111_RS00085 (GZ111_000085) rarA 18426..19700 (-) 1275 WP_000102726.1 replication-associated recombination protein A Machinery gene
  GZ111_RS00090 (GZ111_000090) - 19785..20207 (+) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  GZ111_RS00095 (GZ111_000095) - 20307..20489 (+) 183 WP_000752909.1 CsbD family protein -
  GZ111_RS00100 (GZ111_000100) - 20529..20675 (+) 147 WP_000009238.1 SAS049 family protein -
  GZ111_RS00105 (GZ111_000105) - 20912..21925 (-) 1014 WP_000985878.1 LLM class flavin-dependent oxidoreductase -
  GZ111_RS00110 (GZ111_000110) - 22237..23379 (+) 1143 WP_000409157.1 cysteine desulfurase family protein -
  GZ111_RS00115 (GZ111_000115) mnmA 23380..24498 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47249.82 Da        Isoelectric Point: 8.3526

>NTDB_id=892564 GZ111_RS00085 WP_000102726.1 18426..19700(-) (rarA) [Staphylococcus aureus strain 17-021]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=892564 GZ111_RS00085 WP_000102726.1 18426..19700(-) (rarA) [Staphylococcus aureus strain 17-021]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAATGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAATCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.81

99.057

0.682