Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV04_RS13915 Genome accession   NZ_AP024893
Coordinates   3009240..3009971 (+) Length   243 a.a.
NCBI ID   WP_171138310.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3004240..3014971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS13895 greB 3004735..3005211 (+) 477 WP_042484864.1 transcription elongation factor GreB -
  OCV04_RS13900 - 3005313..3007652 (+) 2340 WP_171138311.1 Tex family protein -
  OCV04_RS13905 - 3007769..3008239 (-) 471 WP_042484858.1 hypothetical protein -
  OCV04_RS13910 bioH 3008388..3009155 (-) 768 WP_171138391.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV04_RS13915 comF 3009240..3009971 (+) 732 WP_171138310.1 ComF family protein Machinery gene
  OCV04_RS13920 nfuA 3010073..3010657 (+) 585 WP_102941282.1 Fe-S biogenesis protein NfuA -
  OCV04_RS13925 nudE 3010822..3011364 (+) 543 WP_102941256.1 ADP compounds hydrolase NudE -
  OCV04_RS13930 cysQ 3011391..3012212 (+) 822 WP_102941257.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV04_RS13935 - 3012291..3013049 (-) 759 WP_171138309.1 type II secretion system protein N -
  OCV04_RS13940 - 3013051..3013560 (-) 510 WP_171138308.1 type II secretion system protein M -
  OCV04_RS13945 gspL 3013570..3014781 (-) 1212 WP_171138307.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27881.27 Da        Isoelectric Point: 9.0827

>NTDB_id=89233 OCV04_RS13915 WP_171138310.1 3009240..3009971(+) (comF) [Vibrio plantisponsor strain CECT 7581]
MLSNWFQKATLLKFKSNTAHWLSPQCPICKLPLNNEDPYGVCSACEVWYSPTPRCQRCGLATLTPVDMCGQCLSKPPPWH
RLYCIGDYQFPLSNRIHQLKYQRQFWQAQPLAKRLSGCIDTPAPVITSVPLHWQRYLRRGFNQSDLIAKHLAAYLGVKHQ
TKLFCRELNTQSQQGLSKAQRKRNLTKAFRLNSHPNSLHVGIVDDVVTTGSTVQHLCQLLLEVGVERIDIYCICRTPEPE
DHR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=89233 OCV04_RS13915 WP_171138310.1 3009240..3009971(+) (comF) [Vibrio plantisponsor strain CECT 7581]
ATGTTATCCAATTGGTTTCAAAAAGCTACGCTGTTGAAATTCAAGAGCAATACCGCCCATTGGCTATCCCCTCAATGCCC
CATTTGTAAGTTGCCATTAAATAACGAAGATCCTTACGGCGTCTGTTCTGCCTGTGAGGTTTGGTATTCCCCTACACCTC
GCTGCCAACGTTGCGGTTTAGCGACGCTGACACCTGTAGACATGTGTGGTCAATGCCTTTCAAAACCTCCGCCTTGGCAC
AGGTTGTATTGTATCGGTGATTATCAGTTTCCGTTAAGTAATCGTATTCACCAGCTCAAATATCAGCGTCAGTTCTGGCA
AGCGCAACCGCTAGCCAAACGCCTCTCTGGATGTATTGATACTCCGGCTCCCGTGATAACCAGTGTCCCTTTGCATTGGC
AGCGATATCTGCGCAGAGGGTTTAATCAAAGTGACCTGATTGCCAAACACTTGGCAGCATATTTGGGAGTTAAACATCAA
ACGAAACTGTTTTGCCGAGAACTCAACACCCAATCACAGCAGGGGCTAAGCAAAGCTCAACGTAAACGTAATTTAACTAA
GGCCTTTCGTCTCAACTCTCATCCCAACAGCCTTCATGTTGGAATCGTAGACGATGTTGTCACCACAGGGAGTACTGTGC
AGCATTTATGTCAACTGCTACTTGAAGTGGGCGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCAGAGCCAGAA
GATCATAGGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(168-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.581

99.177

0.601
  comF Vibrio campbellii strain DS40M4

51.111

92.593

0.473

Multiple sequence alignment