Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RVY84_RS10555 Genome accession   NZ_CP136661
Coordinates   2048197..2048535 (+) Length   112 a.a.
NCBI ID   WP_000981888.1    Uniprot ID   Q6HJG2
Organism   Bacillus sp. 3P20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2043197..2053535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY84_RS10530 (RVY84_10520) - 2043454..2044221 (-) 768 WP_000499699.1 hypothetical protein -
  RVY84_RS10535 (RVY84_10525) - 2044331..2044978 (+) 648 WP_000165940.1 HD domain-containing protein -
  RVY84_RS10540 (RVY84_10530) - 2044975..2046870 (+) 1896 WP_000783199.1 ABC-F family ATP-binding cassette domain-containing protein -
  RVY84_RS10545 (RVY84_10535) - 2046946..2047677 (+) 732 WP_070171398.1 Bax inhibitor-1/YccA family membrane protein -
  RVY84_RS10550 (RVY84_10540) - 2047784..2048038 (+) 255 WP_000975124.1 DUF4318 domain-containing protein -
  RVY84_RS10555 (RVY84_10545) ssb 2048197..2048535 (+) 339 WP_000981888.1 single-stranded DNA-binding protein Machinery gene
  RVY84_RS10560 (RVY84_10550) - 2048561..2049151 (-) 591 WP_000943169.1 TetR/AcrR family transcriptional regulator -
  RVY84_RS10565 (RVY84_10555) - 2049268..2050401 (-) 1134 WP_001066853.1 FAD-dependent oxidoreductase -
  RVY84_RS10570 (RVY84_10560) - 2050660..2051787 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  RVY84_RS10575 (RVY84_10565) - 2051791..2052174 (+) 384 WP_000634868.1 thiol-disulfide oxidoreductase DCC family protein -
  RVY84_RS10580 (RVY84_10570) - 2052258..2052692 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  RVY84_RS10585 (RVY84_10575) - 2052742..2053518 (+) 777 WP_000637470.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12892.75 Da        Isoelectric Point: 9.4347

>NTDB_id=892320 RVY84_RS10555 WP_000981888.1 2048197..2048535(+) (ssb) [Bacillus sp. 3P20]
MMNRAVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=892320 RVY84_RS10555 WP_000981888.1 2048197..2048535(+) (ssb) [Bacillus sp. 3P20]
ATGATGAATCGAGCTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGGAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6HJG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.562
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

93.75

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.545

98.214

0.437
  ssbA Streptococcus mutans UA159

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae R6

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae Rx1

40

98.214

0.393
  ssbB/cilA Streptococcus mitis SK321

40

98.214

0.393