Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   R0492_RS14505 Genome accession   NZ_CP136649
Coordinates   2775401..2777797 (-) Length   798 a.a.
NCBI ID   WP_016886347.1    Uniprot ID   -
Organism   Bacillus licheniformis strain NXU98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2770401..2782797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS14485 - 2773348..2774406 (-) 1059 WP_016885530.1 AI-2E family transporter -
  R0492_RS14490 - 2774494..2774625 (-) 132 WP_003183926.1 YrzQ family protein -
  R0492_RS14495 - 2774641..2774832 (-) 192 WP_016885531.1 hypothetical protein -
  R0492_RS14500 - 2774848..2775312 (-) 465 WP_016885532.1 PRC-barrel domain-containing protein -
  R0492_RS14505 recD2 2775401..2777797 (-) 2397 WP_016886347.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R0492_RS14510 - 2777849..2778499 (-) 651 WP_016885534.1 lipopolysaccharide assembly protein LapB -
  R0492_RS14515 mnmA 2778594..2779712 (-) 1119 WP_016885535.1 tRNA 2-thiouridine(34) synthase MnmA -
  R0492_RS14520 - 2779818..2780957 (-) 1140 WP_009327778.1 cysteine desulfurase family protein -
  R0492_RS14525 cymR 2780978..2781394 (-) 417 WP_009327777.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89775.35 Da        Isoelectric Point: 4.9464

>NTDB_id=892235 R0492_RS14505 WP_016886347.1 2775401..2777797(-) (recD2) [Bacillus licheniformis strain NXU98]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVISSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELIALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=892235 R0492_RS14505 WP_016886347.1 2775401..2777797(-) (recD2) [Bacillus licheniformis strain NXU98]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGATGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTACCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGGGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAACAGATTATGATCTCCCTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGCTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATACAGGTG
ATTATGGTCGGAGACGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTTTTGGCATCGAATGTCAT
TTCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCAGCCGGTATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTTGTGTACCGTACCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCACAACGTGTTTAACGGTGAC
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCATCTCTTTTGACGGGAA
TGAAATTACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTTTGTGCGGGGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCTGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATAGCGCTGCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817